Evidence map›Paper›PMID 38393070›Full record

ArticleThe Journal of cell biology2024

FER-like iron deficiency-induced transcription factor (FIT) accumulates in nuclear condensates.

Ksenia Trofimov, Regina Gratz, Rumen Ivanov, Yvonne Stahl, Petra Bauer, Tzvetina Brumbarova

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ksenia TrofimovInstitute of Botany, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0003-1717-3138
Regina GratzInstitute of Botany, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0002-8820-7211
Rumen IvanovInstitute of Botany, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0001-7909-4123
Yvonne StahlInstitute for Developmental Genetics, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0002-7543-5186
Petra BauerInstitute of Botany, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0002-0404-4532
Tzvetina BrumbarovaInstitute of Botany, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.ORCID 0000-0002-3104-6795
Heinrich Heine University Düsseldorf · DECluster of Excellence on Plant Sciences · DE

Funding

Deutsche Forschungsgemeinschaft F020512056Germany's Excellence Strategy, Deutsche Forschungsgemeinschaft 390686111
6 · The paper itself

Abstract

The functional importance of nuclear protein condensation remains often unclear. The bHLH FER-like iron deficiency-induced transcription factor (FIT) controls iron acquisition and growth in plants. Previously described C-terminal serine residues allow FIT to interact and form active transcription factor complexes with subgroup Ib bHLH factors such as bHLH039. FIT has lower nuclear mobility than mutant FITmSS271AA. Here, we show that FIT undergoes a light-inducible subnuclear partitioning into FIT nuclear bodies (NBs). Using quantitative and qualitative microscopy-based approaches, we characterized FIT NBs as condensates that were reversible and likely formed by liquid-liquid phase separation. FIT accumulated preferentially in NBs versus nucleoplasm when engaged in protein complexes with itself and with bHLH039. FITmSS271AA, instead, localized to NBs with different dynamics. FIT colocalized with splicing and light signaling NB markers. The NB-inducing light conditions were linked with active FIT and elevated FIT target gene expression in roots. FIT condensation may affect nuclear mobility and be relevant for integrating environmental and Fe nutrition signals.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsIronGene Expression Regulation, PlantNuclear BodiesArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsFIT1 protein, ArabidopsisIron

Identifiers

PMID38393070
PMCPMC10890924
OpenAlexW4392100586

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.