Evidence map›Paper›PMID 38391092›Full record

ArticleAging cell2024

Genome-wide profiles of DNA damage represent highly accurate predictors of mammalian age.

Huifen Cao, Bolin Deng, Tianrong Song, Jiabian Lian, Lu Xia, Xiaojing Chu, Yufei Zhang, Fujian Yang, Chunlian Wang, Ye Cai and 2 more

Abstract read
In one paragraph

Article in Aging cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. The DREAM complex links somatic mutation, lifespan, and disease.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Huifen CaoInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Bolin DengInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Tianrong SongInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Jiabian LianDepartment of Clinical Laboratory, the First Affiliated Hospital of Xiamen University, Xiamen, China.
Lu XiaXiamen Cell Therapy Research Center, the First Affiliated Hospital of Xiamen University, Xiamen, China.
Xiaojing ChuChangping Laboratory, Beijing, China.
Yufei ZhangInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Fujian YangInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Chunlian WangInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Ye CaiInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Yong DiaoInstitute of Genomics, School of Medicine, Huaqiao University, Xiamen, China.
Philipp KapranovState Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.ORCID 0000-0003-2647-4856

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of novel age-related biomarkers represents an area of intense research interest. Despite multiple studies associating DNA damage with aging, there is a glaring paucity of DNA damage-based biomarkers of age, mainly due to the lack of precise methods for genome-wide surveys of different types of DNA damage. Recently, we developed two techniques for genome-wide mapping of the most prevalent types of DNA damage, single-strand breaks and abasic sites, with nucleotide-level resolution. Herein, we explored the potential of genomic patterns of DNA damage identified by these methods as a source of novel age-related biomarkers using mice as a model system. Strikingly, we found that models based on genomic patterns of either DNA lesion could accurately predict age with higher precision than the commonly used transcriptome analysis. Interestingly, the informative patterns were limited to relatively few genes and the DNA damage levels were positively or negatively correlated with age. These findings show that previously unexplored high-resolution genomic patterns of DNA damage contain useful information that can contribute significantly to both practical applications and basic science.

Indexed as

AgingDNA DamageAnimalsGenomeMaleMiceMice, Inbred C57BLabasic siteagingbiomarkersbreakomemachine learningsingle‐strand DNA breakSSiNGLeSSiNGLe‐AP

Identifiers

PMID38391092
PMCPMC11113270

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.