Evidence map›Paper›PMID 38389535›Full record

ArticleFrontiers in microbiology2024

Whole genome sequencing and characterization of

Petra Patakova, Maryna Vasylkivska, Karel Sedlar, Katerina Jureckova, Matej Bezdicek, Petra Lovecka, Barbora Branska, Petr Kastanek, Karel Krofta

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Petra PatakovaDepartment of Biotechnology, University of Chemistry and Technology Prague, Prague, Czechia.
Maryna VasylkivskaDepartment of Biotechnology, University of Chemistry and Technology Prague, Prague, Czechia.
Karel SedlarDepartment of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czechia.
Katerina JureckovaDepartment of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czechia.
Matej BezdicekDepartment of Internal Medicine-Hematology and Oncology, University Hospital Brno, Brno, Czechia.
Petra LoveckaDepartment of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Prague, Czechia.
Barbora BranskaDepartment of Biotechnology, University of Chemistry and Technology Prague, Prague, Czechia.
Petr KastanekEcofuel Laboratories s.r.o., Prague, Czechia.
Karel KroftaHop Research Institute, Co. Ltd., Zatec, Czechia.
University of Chemistry and Technology, Prague · CZBrno University of Technology · CZEcofuel Laboratories (Czechia) · CZHop Research Institute (Czechia) · CZUniversity Hospital Brno · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: This paper brings new information about the genome and phenotypic characteristics of Methods: Results and discussion: The typical appearance characteristics of the strain include the formation of symplasmata in submerged liquid culture and the formation of pale yellow colonies on agar. The genetic information of the strain (in total 4.8 Mb) is divided between a chromosome and two plasmids. The strain lacks any CRISPR-Cas system but is equipped with four restriction-modification systems. The phenotypic analysis focused on growth under both aerobic and anaerobic conditions, as well as traits associated with plant growth promotion. At both levels (genomic and phenotypic), the production of siderophores, indoleacetic acid-derived growth promoters, gluconic acid, and enzyme activities related to the degradation of complex organic compounds were found. Extracellular gluconic acid production under aerobic conditions (up to 8 g/l) is probably the result of glucose oxidation by the membrane-bound pyrroloquinoline quinone-dependent enzyme glucose dehydrogenase. The strain has a number of properties potentially beneficial to the hop plant and its closest relatives include the strains also isolated from the aerial parts of plants, yet its safety profile needs to be addressed in follow-up research.

Indexed as

genome characterizationgluconic acidhops endophytePantoea agglomeransplant growth promotion

Identifiers

PMID38389535
PMCPMC10882544
OpenAlexW4391652973

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.