Evidence map›Paper›PMID 38389324›Full record

ArticleVirus research2024

Distinct phenotype of SARS-CoV-2 Omicron BA.1 in human primary cells but no increased host range in cell lines of putative mammalian reservoir species.

Manel Essaidi-Laziosi, Francisco J Pérez-Rodríguez, Catia Alvarez, Pascale Sattonnet-Roche, Giulia Torriani, Meriem Bekliz, Kenneth Adea, Matthias Lenk, Tasnim Suliman, Wolfgang Preiser and 4 more

Open access · goldAbstract read
In one paragraph

Article in Virus research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Manel Essaidi-LaziosiDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland; Geneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland.
Francisco J Pérez-RodríguezGeneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Catia AlvarezDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland; Geneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland.
Pascale Sattonnet-RocheGeneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland; Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Giulia TorrianiDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland.
Meriem BeklizDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland; Geneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland.
Kenneth AdeaDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland; Geneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland.
Matthias LenkFriedrich-Loeffler-Institute, Federal Research Institute for Animal Health, Greifswald, Germany.
Tasnim SulimanDepartment of Medical Biosciences, University of the Western Cape, Cape Town, South Africa.
Wolfgang PreiserDivision of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa; Division of Medical Virology, Tygerberg Hospital, National Health Laboratory Service, Cape Town, South Africa.
Marcel A MüllerInstitute of Virology Charité, - Universitätsmedizin Berlin, Berlin, Germany.
Christian DrostenInstitute of Virology Charité, - Universitätsmedizin Berlin, Berlin, Germany.
Laurent KaiserGeneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland; Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva & Faculty of Medicine, University of Geneva, 1205 Geneva, Switzerland; Division of Infectious Diseases, Geneva University Hospitals, 1205 Geneva, Switzerland.
Isabella EckerleDepartment of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland; Geneva Centre for Emerging Viral Diseases, University Hospitals Geneva, and University of Geneva, Switzerland; Division of Infectious Diseases, Geneva University Hospitals, 1205 Geneva, Switzerland. Electronic address: Isabella.eckerle@hcuge.ch.
University of Geneva · CHCharité - Universitätsmedizin Berlin · DEUniversity Hospital of Geneva · CHFriedrich-Loeffler-Institut · DEStellenbosch University · ZAUniversity of the Western Cape · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2's genetic plasticity has led to several variants of concern (VOCs). Here we studied replicative capacity for seven SARS-CoV-2 isolates (B.1, Alpha, Beta, Gamma, Delta, Zeta, and Omicron BA.1) in primary reconstituted airway epithelia (HAE) and lung-derived cell lines. Furthermore, to investigate the host range of Delta and Omicron compared to ancestral SARS-CoV-2, we assessed replication in 17 cell lines from 11 non-primate mammalian species, including bats, rodents, insectivores and carnivores. Only Omicron's phenotype differed in vitro, with rapid but short replication and efficient production of infectious virus in nasal HAEs, in contrast to other VOCs, but not in lung cell lines. No increased infection efficiency for other species was observed, but Delta and Omicron infection efficiency was increased in A549 cells. Notably replication in A549 and Calu3 cells was lower than in nasal HAE. Our results suggest better adaptation of VOCs towards humans, without an extended host range, and may be relevant to the search for the putative intermediate host and reservoirs prior to the pandemic.

Indexed as

ChiropteraCOVID-19AnimalsCell LineHumansMammalsSARS-CoV-2COVID19OmicronPrimary airway epithelial cellsReservoir hostSARS-CoV-2Variants of concern

Identifiers

PMID38389324
PMCPMC10652112
OpenAlexW4388440328

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.