Evidence map›Paper›PMID 38388640›Full record

ArticleNature communications2024

Stalled translation by mitochondrial stress upregulates a CNOT4-ZNF598 ribosomal quality control pathway important for tissue homeostasis.

Ji Geng, Shuangxi Li, Yu Li, Zhihao Wu, Sunil Bhurtel, Suman Rimal, Danish Khan, Rani Ohja, Onn Brandman, Bingwei Lu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Quality control of protein import into mammalian mitochondria.Protein science : a publication of the Protein Society · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ji Geng *Department of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA. jigeng@stanford.edu.ORCID 0000-0002-6055-7156
Shuangxi Li *Department of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Yu LiDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Zhihao WuDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Sunil BhurtelDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Suman RimalDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Danish KhanDepartment of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0002-0650-3990
Rani OhjaDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Onn BrandmanDepartment of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0002-2084-154X
Bingwei LuDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, 94305, USA. bingwei@stanford.edu.ORCID 0000-0002-5807-7014
Stanford University · USShandong University · CNStanford Medicine · US

Funding

Molecular Genetic Analysis of TORC1 and TORC2 Signaling in Neuronal MaintenanceR01NS084412 · NINDS · STANFORD UNIVERSITY · PI Bingwei Lu · 2014 to 2026
$4.9M
Genetic Control of Neural Stem Cell HomeostasisR01NS083417 · NINDS · STANFORD UNIVERSITY · PI LU, BINGWEI · 2013 to 2022
$3.5M
Request for Support to Purchase Automated MicroscopeR01GM115968 · NIGMS · STANFORD UNIVERSITY · PI BRANDMAN, ONN · 2015 to 2023
$2.9M
Mitochondrial inner membrane architecture in skeletal muscle pathophysiologyR01AR074875 · NIAMS · STANFORD UNIVERSITY · PI LU, BINGWEI · 2019 to 2023
$2.0M
Genetic control of neural stem cell homeostasisR37NS083417 · NINDS · STANFORD UNIVERSITY · PI Bingwei Lu · 2024 to 2026
$1.9M
NIAMS NIH HHS R01 AR074875NIGMS NIH HHS R01 GM115968NINDS NIH HHS R01 NS083417NINDS NIH HHS R01 NS084412NINDS NIH HHS R37 NS083417
6 · The paper itself

Abstract

Translational control exerts immediate effect on the composition, abundance, and integrity of the proteome. Ribosome-associated quality control (RQC) handles ribosomes stalled at the elongation and termination steps of translation, with ZNF598 in mammals and Hel2 in yeast serving as key sensors of translation stalling and coordinators of downstream resolution of collided ribosomes, termination of stalled translation, and removal of faulty translation products. The physiological regulation of RQC in general and ZNF598 in particular in multicellular settings is underexplored. Here we show that ZNF598 undergoes regulatory K63-linked ubiquitination in a CNOT4-dependent manner and is upregulated upon mitochondrial stresses in mammalian cells and Drosophila. ZNF598 promotes resolution of stalled ribosomes and protects against mitochondrial stress in a ubiquitination-dependent fashion. In Drosophila models of neurodegenerative diseases and patient cells, ZNF598 overexpression aborts stalled translation of mitochondrial outer membrane-associated mRNAs, removes faulty translation products causal of disease, and improves mitochondrial and tissue health. These results shed lights on the regulation of ZNF598 and its functional role in mitochondrial and tissue homeostasis.

Indexed as

Protein BiosynthesisSaccharomyces cerevisiae ProteinsAnimalsCarrier ProteinsDrosophilaDrosophila ProteinsHomeostasisHumansIntracellular Signaling Peptides and ProteinsMammalsRibosomesSaccharomyces cerevisiaeTranscription FactorsUbiquitinationUbiquitin-Protein LigasesCarrier ProteinsCnot4 protein, DrosophilaCNOT4 protein, humanDrosophila ProteinsHel2 protein, S cerevisiaeIntracellular Signaling Peptides and ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitin-Protein LigasesZNF598 protein, human

Identifiers

PMID38388640
PMCPMC10883933
OpenAlexW4392044656

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.