Evidence map›Paper›PMID 38388638›Full record

ArticleScientific data2024

Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57.

Yuanbao Lei, Yunjiang Zhang, Linyun Xu, Wendong Ma, Ziqi Zhou, Jie Li, Pengyu Quan, Muhiuddin Faruquee, Dechen Yang, Fan Zhang and 8 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yuanbao Lei *Jiamusi Rice Research Institute of Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154026, China.
Yunjiang Zhang *Jiamusi Rice Research Institute of Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154026, China.
Linyun Xu *Institute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Wendong MaJiamusi Rice Research Institute of Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154026, China.
Ziqi ZhouInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jie LiHeilongjiang Lianjiangkou Seed Co., Ltd, Jiamusi, 154024, China.
Pengyu QuanHeilongjiang Lianjiangkou Seed Co., Ltd, Jiamusi, 154024, China.
Muhiuddin FaruqueeInternational Rice Research Institute, Bangladesh Office, Dhaka, 1213, Bangladesh.
Dechen YangInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Fan ZhangInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yongli ZhouInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Guangjun QuanHeilongjiang Lianjiangkou Seed Co., Ltd, Jiamusi, 154024, China.
Xiuqin ZhaoInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Wensheng WangInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Bailong LiuRice Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, China.
Zhikang LiInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.ORCID 0000-0002-6076-4913
Jianlong XuInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. xujlcaas@126.com.
Tianqing ZhengInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. tonyztq@163.com.ORCID 0000-0002-6313-3068

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then generate a set of annotation data for an early-matured Geng/japonica glutinous rice mega variety genome, Longgeng 57 (LG57), which carries multiple elite traits including good grain quality and wide adaptability. Together with the SRS data from three parents of LG57, pedigree genome variations were called for three representative types of genes. These data sets can be used for deep variation mining, aid in the discovery of new insights into genome structure, function, and evolution, and help to provide essential support to biological research in general.

Indexed as

Genome, PlantOryzaPhenotypeSequence Analysis, DNAWhole Genome Sequencing

Identifiers

PMID38388638
PMCPMC10884013

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.