Evidence map›Paper›PMID 38388531›Full record

ArticleNature communications2024

TREX tetramer disruption alters RNA processing necessary for corticogenesis in THOC6 Intellectual Disability Syndrome.

Elizabeth A Werren, Geneva R LaForce, Anshika Srivastava, Delia R Perillo, Shaokun Li, Katherine Johnson, Safa Baris, Brandon Berger, Samantha L Regan, Christian D Pfennig and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 15 institutions in 6 countries.

Elizabeth A WerrenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID 0000-0002-0151-2564
Geneva R LaForceDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.ORCID 0000-0002-5046-5194
Anshika SrivastavaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Delia R PerilloDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Shaokun LiAdvanced Precision Medicine Laboratory, The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Katherine JohnsonAdvanced Precision Medicine Laboratory, The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Safa BarisDivision of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, The Isil Berat Barlan Center for Translational Medicine, Istanbul, 34722, Turkey.
Brandon BergerAdvanced Precision Medicine Laboratory, The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Samantha L ReganDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Christian D PfennigDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Sonja de MunnikDepartment of Human Genetics, Radboud University Medical Centre Nijmegen, Nijmegen, 6524, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Centre Nijmegen, Nijmegen, 6524, the Netherlands.
Malavika HebbarDivision of Genetic Medicine, Department of Pediatrics, University of Washington, 98195, Seattle, WA, USA.
Raúl Jimenez-HerediaLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, 1090, Austria.
Elif Karakoc-AydinerDivision of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, The Isil Berat Barlan Center for Translational Medicine, Istanbul, 34722, Turkey.
Ahmet OzenDivision of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, The Isil Berat Barlan Center for Translational Medicine, Istanbul, 34722, Turkey.
Jasmin DmytrusResearch Centre for Molecular Medicine of the Austrian Academy of Sciences, Vienna, 1090, Austria.
Ana KroloLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, 1090, Austria.
Ken CorningGreenwood Genetic Center, Greenwood, SC, 29646, USA.
E J PrijolesGreenwood Genetic Center, Greenwood, SC, 29646, USA.
Raymond J LouieGreenwood Genetic Center, Greenwood, SC, 29646, USA.
Robert Roger LebelSection of Medical Genetics, SUNY Upstate Medical University, Syracuse, NY, 13210, USA.
Thuy-Linh LeImagine Institute, INSERM U1163, Paris Cité University, Paris, 75015, France.
Jeanne AmielImagine Institute, INSERM U1163, Paris Cité University, Paris, 75015, France.
Christopher T GordonImagine Institute, INSERM U1163, Paris Cité University, Paris, 75015, France.ORCID 0000-0002-9300-8399
Kaan BoztugLudwig Boltzmann Institute for Rare and Undiagnosed Diseases, Vienna, 1090, Austria.
Katta M GirishaDepartment of Medical Genetics, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, 576104, India.ORCID 0000-0002-0139-8239
Anju ShuklaDepartment of Medical Genetics, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, 576104, India.ORCID 0000-0003-2471-4094
Stephanie L BielasDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, 48109, USA. sbielas@umich.edu.ORCID 0000-0003-0567-5632
Ashleigh E SchafferDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA. ashleigh.schaffer@case.edu.ORCID 0000-0002-1164-697X
University of Michigan · USGreenwood Genetic Center · USJackson Laboratory · USMarmara University · TRAustrian Academy of Sciences · ATInserm · FRLudwig Boltzmann Institute for Rare and Undiagnosed Diseases · ATManipal Academy of Higher Education · INRadboud University Nijmegen · NLCase Western Reserve University · USHôpital Necker-Enfants Malades · FRSanjay Gandhi Post Graduate Institute of Medical Sciences · INSUNY Upstate Medical University · USUniversity of Washington · USUniversity School · US

Funding

GRADUATE TRAINING IN CELLULAR AND MOLECULAR BIOLOGYT32GM008056 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI DIEHL, JOHN ALAN, SNIDER, MARTIN D · 1985 to 2019
$7.1M
Disease Mechanisms of Pontocerebellar Hypoplasia Type 10R01NS123524 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI SCHAFFER, ASHLEIGH E · 2021 to 2025
$2.6M
Training in Neurodegenerative DiseasesT32NS077888 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI Xiongwei Zhu · 2013 to 2026
$1.8M
CTSA Postdoctoral T32 at the University of MichiganT32TR004764 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VICKI L ELLINGROD, Steven Edward Harte · 2024 to 2026
$1.4M
Understanding the Role of CLP1 in Mammalian mRNA Transcription and CleavageF31NS122207 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI LAFORCE, GENEVA · 2021 to 2021
$46k
NCATS NIH HHS T32 TR004764NIGMS NIH HHS T32 GM008056NINDS NIH HHS F31 NS122207NINDS NIH HHS R01 NS123524NINDS NIH HHS T32 NS077888
6 · The paper itself

Abstract

THOC6 variants are the genetic basis of autosomal recessive THOC6 Intellectual Disability Syndrome (TIDS). THOC6 is critical for mammalian Transcription Export complex (TREX) tetramer formation, which is composed of four six-subunit THO monomers. The TREX tetramer facilitates mammalian RNA processing, in addition to the nuclear mRNA export functions of the TREX dimer conserved through yeast. Human and mouse TIDS model systems revealed novel THOC6-dependent, species-specific TREX tetramer functions. Germline biallelic Thoc6 loss-of-function (LOF) variants result in mouse embryonic lethality. Biallelic THOC6 LOF variants reduce the binding affinity of ALYREF to THOC5 without affecting the protein expression of TREX members, implicating impaired TREX tetramer formation. Defects in RNA nuclear export functions were not detected in biallelic THOC6 LOF human neural cells. Instead, mis-splicing was detected in human and mouse neural tissue, revealing novel THOC6-mediated TREX coordination of mRNA processing. We demonstrate that THOC6 is required for key signaling pathways known to regulate the transition from proliferative to neurogenic divisions during human corticogenesis. Together, these findings implicate altered RNA processing in the developmental biology of TIDS neuropathology.

Indexed as

Intellectual DisabilityRNAStilbenesSulfonic AcidsAnimalsHumansMammalsMiceNuclear ProteinsRNA-Binding ProteinsRNA, MessengerRNA Processing, Post-TranscriptionalRNA Transport4-trimethylammonium-4'-isothiocyanostilbene-2,2'-disulfonic acidNuclear ProteinsRNARNA-Binding ProteinsRNA, MessengerStilbenesSulfonic AcidsTHOC5 protein, humanTHOC6 protein, human

Identifiers

PMID38388531
PMCPMC10884030
OpenAlexW4392041431

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.