Evidence map›Paper›PMID 38386982›Full record

ArticleGenome biology and evolution2024

High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex.

S Lorena Ament-Velásquez, Aaron A Vogan, Ola Wallerman, Fanny E Hartmann, Valérie Gautier, Philippe Silar, Tatiana Giraud, Hanna Johannesson

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

S Lorena Ament-VelásquezDivision of Population Genetics, Department of Zoology, Stockholm University, 106 91 Stockholm, Sweden.ORCID 0000-0003-3371-9292
Aaron A VoganSystematic Biology, Department of Organismal Biology, Uppsala University, 752 36 Uppsala, Sweden.ORCID 0000-0003-2013-7445
Ola WallermanDepartment of Medical Biochemistry and Microbiology, Comparative Genetics and Functional Genomics, Uppsala University, 752 37 Uppsala, Sweden.
Fanny E HartmannEcologie Systematique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91198 Gif-sur-Yvette, France.ORCID 0000-0002-9365-4008
Valérie GautierLaboratoire Interdisciplinaire des Energies de Demain (LIED), Université de Paris Cité, F-75013 Paris, France.
Philippe SilarLaboratoire Interdisciplinaire des Energies de Demain (LIED), Université de Paris Cité, F-75013 Paris, France.ORCID 0000-0003-0104-987X
Tatiana GiraudEcologie Systematique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91198 Gif-sur-Yvette, France.
Hanna JohannessonSystematic Biology, Department of Organismal Biology, Uppsala University, 752 36 Uppsala, Sweden.ORCID 0000-0001-6359-9856
Uppsala University · SECentre National de la Recherche Scientifique · FRUniversité Paris Cité · FRStockholm University · SE

Funding

European Research Council ERC-2014-COGNational Academic Infrastructure for Supercomputing in SwedenNational Genomics InfrastructureSwedish National Infrastructure for ComputingSwedish Research Council 2022-06725Uppsala Genome CenterUppsala Multidisciplinary Center for Advanced Computational Science
6 · The paper itself

Abstract

The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of 7 closely related species. In addition to P. anserina, high-quality genomic resources are available for 2 of these taxa. Here, we provide chromosome-level annotated assemblies of the 4 remaining species of the complex, as well as a comprehensive data set of annotated assemblies from a total of 28 Podospora genomes. We find that all 7 species have genomes of around 35 Mb arranged in 7 chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.

Indexed as

PodosporaFungal ProteinsPhylogenyReproductionFungal Proteinschromosomal rearrangementsphylogenomicsPodospora bellae-mahoneyiPodospora pseudoanserinaPodospora pseudocomataPodospora pseudopaucisetaSordariales

Identifiers

PMID38386982
PMCPMC10936905
OpenAlexW4392088563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.