ArticleFrontiers in plant science2024
A genome-wide association analysis for salt tolerance during the soybean germination stage and development of KASP markers.
Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 13 citations in OpenAlex.
- GWAS-based identification of a candidate gene and development of a predictive KASP marker for seed protein and oil contents in soybean.Genes & genomics · 2026Article
- Genome-Wide Association Identifies Candidate Genes for Salt Tolerance in Soybean at Emergence and Seedling Stages.Biology · 2026Article
- Development and application of KASP molecular marker for accelerated breeding of low-acid Cerasus humilis cultivars.Plant cell reports · 2026Article
- Integrated BSA-Seq and RNA-Seq reveals genes associated with salt tolerance at the germination stage in foxtail millet (Setaria italica (L.) P. Beauv.).BMC plant biology · 2026Article
- Identification of Intronless Genes and the Development of KASP Markers for Salt Responses inGenes · 2026Article
- Stage-specific GWAS identifies a pleiotropic ankyrin repeat locus near GmSALT3 for salinity tolerance in soybean.Plant cell reports · 2026Article
- Identification of Candidate Genes for Low Phosphorus Tolerance in Maize Seedling Stage Based on GWAS and Transcriptome.Plants (Basel, Switzerland) · 2025Article
- Development and Validation of Multi-Locus GWAS-Based KASP Markers for MaizePlants (Basel, Switzerland) · 2025Article
- A Comprehensive Evaluation of Soybean Germplasm Resources for Salt Tolerance During Germination.Plants (Basel, Switzerland) · 2025Article
- Needle and Branch Trait Variation Analysis and Associated SNP Loci Mining inInternational journal of molecular sciences · 2024Article
- QTL Detection of Salt Tolerance at Soybean Seedling Stage Based on Genome-Wide Association Analysis and Linkage Analysis.Plants (Basel, Switzerland) · 2024Article
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Authors and funding
10 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salt stress poses a significant challenge to crop productivity, and understanding the genetic basis of salt tolerance is paramount for breeding resilient soybean varieties. In this study, a soybean natural population was evaluated for salt tolerance during the germination stage, focusing on key germination traits, including germination rate (GR), germination energy (GE), and germination index (GI). It was seen that under salt stress, obvious inhibitions were found on these traits, with GR, GE, and GI diminishing by 32% to 54% when compared to normal conditions. These traits displayed a coefficient of variation (31.81% to 50.6%) and a substantial generalized heritability (63.87% to 86.48%). Through GWAS, a total of 1841 significant single-nucleotide polymorphisms (SNPs) were identified to be associated with these traits, distributed across chromosome 2, 5, 6, and 20. Leveraging these significant association loci, 12 candidate genes were identified to be associated with essential functions in coordinating cellular responses, regulating osmotic stress, mitigating oxidative stress, clearing reactive oxygen species (ROS), and facilitating heavy metal ion transport - all of which are pivotal for plant development and stress tolerance. To validate the candidate genes, quantitative real-time polymerase chain reaction (qRT-PCR) analysis was conducted, revealing three highly expressed genes
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