Evidence map›Paper›PMID 38383804›Full record

ReviewNature reviews. Gastroenterology & hepatology2024

Another renaissance for bile acid gastrointestinal microbiology.

Jason M Ridlon, H Rex Gaskins

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Gastroenterology & hepatology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 1 pooled it
32.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 1 synthesis or guideline pooled it, 139 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Applied and environmental microbiology · 2026
    Article
  10. Probiotic Potential ofFoods (Basel, Switzerland) · 2026
    Article
  11. Bile acid signaling in health and disease.Molecular biomedicine · 2026
    Review
  12. Expanding bile acid diversityNatural product reports · 2026
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Ultrafiltered Mulberry (Foods (Basel, Switzerland) · 2026
    Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jason M RidlonDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, USA. jmridlon@illinois.edu.
H Rex GaskinsDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, USA. hgaskins@illinois.edu.ORCID http://orcid.org/0000-0002-1249-535X
University of Illinois Urbana-Champaign · US

Funding

Diet modulation of bacterial sulfur & bile acid metabolism and colon cancer riskR01CA204808 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GASKINS, REX, MUTLU, ECE A. · 2016 to 2020
$2.0M
Gut bacterial metabolism of the side-chain of corticosteroidsR01GM145920 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2022 to 2025
$1.6M
Role of Gut Bacterial Side-Chain Cleavage of Cortisol in Host 11Beta-Hydroxyandrostenedione FormationR01GM134423 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2020 to 2023
$1.3M
Studies towards a pan-genome and genetic manipulation of Clostridium scindensR03AI147127 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIDLON, JASON MICHAEL · 2020 to 2021
$151k
NCI NIH HHS R01 CA204808NIAID NIH HHS R03 AI147127NIGMS NIH HHS R01 GM134423NIGMS NIH HHS R01 GM145920
6 · The paper itself

Abstract

The field of bile acid microbiology in the gastrointestinal tract is going through a current rebirth after a peak of activity in the late 1970s and early 1980s. This renewed activity is a result of many factors, including the discovery near the turn of the century that bile acids are potent signalling molecules and technological advances in next-generation sequencing, computation, culturomics, gnotobiology, and metabolomics. We describe the current state of the field with particular emphasis on questions that have remained unanswered for many decades in both bile acid synthesis by the host and metabolism by the gut microbiota. Current knowledge of established enzymatic pathways, including bile salt hydrolase, hydroxysteroid dehydrogenases involved in the oxidation and epimerization of bile acid hydroxy groups, the Hylemon-Bjӧrkhem pathway of bile acid C7-dehydroxylation, and the formation of secondary allo-bile acids, is described. We cover aspects of bile acid conjugation and esterification as well as evidence for bile acid C3-dehydroxylation and C12-dehydroxylation that are less well understood but potentially critical for our understanding of bile acid metabolism in the human gut. The physiological consequences of bile acid metabolism for human health, important caveats and cautionary notes on experimental design and interpretation of data reflecting bile acid metabolism are also explored.

Indexed as

Bile Acids and SaltsGastrointestinal MicrobiomeHumansBile Acids and Salts

Identifiers

PMID38383804
PMCPMC11558780
OpenAlexW4391991330

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.