Evidence map›Paper›PMID 38383785›Full record

ArticleNature2024

UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER.

Paul A DaRosa, Ivan Penchev, Samantha C Gumbin, Francesco Scavone, Magda Wąchalska, Joao A Paulo, Alban Ordureau, Joshua J Peter, Yogesh Kulathu, J Wade Harper and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Mapping the architecture of protein complexes inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. NFYB Integrates Hormonal Signals into Tissue Allometry by Promoting Protein Biosynthesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Evaluating evidence for UFMylation client diversity.Nature reviews. Molecular cell biology · 2026
    Article
  7. The mechanistic basis and cellular functions of UFMylation.Nature reviews. Molecular cell biology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. UFMylation of Pyruvate Dehydrogenase Regulates Mitochondrial Metabolism.bioRxiv : the preprint server for biology · 2026
    Article
  12. Ribosome-associated quality control and related mechanisms.Nature structural & molecular biology · 2026
    Review
  13. Review
  14. Article
  15. Article
  16. Quality control and signaling pathways at stalled ribosomes.Experimental & molecular medicine · 2026
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Paul A DaRosa *Department of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0001-7214-8758
Ivan Penchev *Department of Biochemistry, Gene Center, University of Munich, Munich, Germany.
Samantha C GumbinDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0257-509X
Francesco ScavoneDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-3560-7120
Magda WąchalskaDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-0429-888X
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-4291-413X
Alban OrdureauDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-4924-8520
Joshua J PeterMedical Research Council Protein Phosphorylation and Ubiquitylation Unit (MRC-PPU), School of Life Sciences, University of Dundee, Dundee, UK.
Yogesh KulathuMedical Research Council Protein Phosphorylation and Ubiquitylation Unit (MRC-PPU), School of Life Sciences, University of Dundee, Dundee, UK.ORCID 0000-0002-3274-1642
J Wade HarperDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-6944-7236
Thomas BeckerDepartment of Biochemistry, Gene Center, University of Munich, Munich, Germany.ORCID 0000-0001-8458-2738
Roland BeckmannDepartment of Biochemistry, Gene Center, University of Munich, Munich, Germany. beckmann@genzentrum.lmu.de.ORCID 0000-0003-4291-3898
Ron R KopitoDepartment of Biology, Stanford University, Stanford, CA, USA. kopito@stanford.edu.ORCID 0000-0001-5027-6935
Stanford University · USHarvard University · USUniversity of Dundee · GBGene Therapy Laboratory · FRMemorial Sloan Kettering Cancer Center · USStanford Medicine · US

Funding

The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
The Ubiquitin Proteasome System in Quality ControlR01GM074874 · NIGMS · STANFORD UNIVERSITY · PI KOPITO, RON R · 2006 to 2022
$8.0M
EPILEPSY TRAINING PROGRAMT32NS007280 · NINDS · STANFORD UNIVERSITY · PI HUGUENARD, JOHN R · 1985 to 2020
$3.6M
The role of UFMylation in ribosome quality control at the ERR01GM148477 · NIGMS · STANFORD UNIVERSITY · PI RON R KOPITO · 2023 to 2026
$2.4M
Regulation of PINK1 and PARKIN-Dependent MitophagyR01NS083524 · NINDS · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W · 2020 to 2024
$2.2M
Resolving the role of nicotine-mediated phosphorylation on pancreatic fibrosisK01DK098285 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2013 to 2017
$638k
NIA NIH HHS R01 AG011085NIDDK NIH HHS K01 DK098285NIGMS NIH HHS R01 GM074874NIGMS NIH HHS R01 GM148477NIGMS NIH HHS T32 GM007276NIGMS NIH HHS U24 GM129541NINDS NIH HHS R01 NS083524NINDS NIH HHS T32 NS007280
6 · The paper itself

Abstract

Reversible modification of target proteins by ubiquitin and ubiquitin-like proteins (UBLs) is widely used by eukaryotic cells to control protein fate and cell behaviour

Indexed as

Endoplasmic ReticulumProtein Processing, Post-TranslationalRibosome Subunits, Large, EukaryoticUbiquitin-Protein LigasesBinding SitesBiocatalysisCryoelectron MicroscopyIntracellular MembranesPeptidyl TransferasesProtein BindingRibosomal ProteinsRNA, TransferSubstrate SpecificityPeptidyl TransferasesRibosomal ProteinsRNA, TransferUbiquitin-Protein Ligases

Identifiers

PMID38383785
PMCPMC11469336
OpenAlexW4391994154

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.