Evidence map›Paper›PMID 38383552›Full record

ArticleNature communications2024

Multi-molecular hyperspectral PRM-SRS microscopy.

Wenxu Zhang, Yajuan Li, Anthony A Fung, Zhi Li, Hongje Jang, Honghao Zha, Xiaoping Chen, Fangyuan Gao, Jane Y Wu, Huaxin Sheng and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
27.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. PLANCK: super-multiplex optical imaging without labeling.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Imaging Cellular Metabolic Rewiring with SuMMIT-SRS.bioRxiv : the preprint server for biology · 2025
    Article
  16. Review
  17. Article
  18. Hyperspectral Fluorescence Imaging with a New Polarity-Ultrasensitive Fluorescent Probe.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  19. Review
  20. LYVAC/PDZD8 is a lysosomal vacuolator.Science (New York, N.Y.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Wenxu Zhang *Shu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Yajuan Li *Shu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Anthony A Fung *Shu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Zhi LiShu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Hongje JangShu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-3987-2538
Honghao ZhaShu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Xiaoping ChenDept. of Neurology, Northwestern University School of Medicine, Chicago, IL, USA.
Fangyuan GaoCenter for Translational Vision Research, School of Medicine, University of California Irvine, Irvine, CA, USA.
Jane Y WuDept. of Neurology, Northwestern University School of Medicine, Chicago, IL, USA.
Huaxin ShengDept. of Anesthesiology, Duke University School of Medicine, Durham, NC, USA.
Junjie YaoDept. of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0002-2381-706X
Dorota Skowronska-KrawczykCenter for Translational Vision Research, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0002-5758-4225
Sanjay JainDept. of Medicine, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0003-2804-127X
Lingyan ShiShu Chien-Gene Lay Dept. of Bioengineering, University of California San Diego, La Jolla, CA, USA. Lshi365@gmail.com.
University of California San Diego · USDuke University · USNorthwestern University · USUniversity of California, Irvine · USWashington University in St. Louis · US

Funding

Neuropathology CoreP30AG013854 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI VASSAR, ROBERT J · 1996 to 2020
$28.9M
Training and Career Development CoreU54CA132378 · NCI · CITY COLLEGE OF NEW YORK · PI Tim Alan Ahles, ADRIANA ESPINOSA · 2008 to 2026
$28.9M
Training and Career Development and Education CoreU54CA137788 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Daniel Alan Heller · 2008 to 2026
$28.1M
HIPC Data Coordinating CenterU01AI167892 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Steven H. Kleinstein, Bjoern Peters · 2022 to 2026
$18.7M
The Human Lung BioMolecular Multi-Scale Atlas Program (HuBMAP-Lung)U54HL165443 · NHLBI · UNIVERSITY OF ROCHESTER · PI PRYHUBER, GLORIA S · 2022 to 2025
$8.0M
Kidney single cell and spatial molecular atlas project - KIDSSMAPU54DK134301 · NIDDK · WASHINGTON UNIVERSITY · PI ASHKAR, TAREK MAURICE, JAIN, SANJAY · 2022 to 2025
$7.8M
Organ Specific ProjectU54HL145608 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JAIN, SANJAY, ZHANG, KUN · 2018 to 2021
$5.6M
NEI UCI Center Core Grant for Vision ResearchP30EY034070 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Vladimir Jivkov Kefalov · 2022 to 2026
$3.7M
High-resolution High-speed Photoacoustic and Ultrasound Imaging of SmallVessel Functions in Ischemic StrokeR01NS111039 · NINDS · DUKE UNIVERSITY · PI YAO, JUNJIE · 2019 to 2023
$2.7M
Sugar Probed SRS Volumetric imaging of Metabolic ActivitiesR01GM149976 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Lingyan Shi · 2023 to 2026
$1.6M
Novel Optical Imaging Approach to Study Neurovascular Coupling SystemR21NS125395 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHI, LINGYAN · 2022 to 2022
$435k
NCI NIH HHS U54 CA132378NCI NIH HHS U54 CA137788NEI NIH HHS P30 EY034070NHLBI NIH HHS U54 HL165443NIAID NIH HHS U01 AI167892NIA NIH HHS P30 AG013854NIDDK NIH HHS U54 DK134301NIGMS NIH HHS R01 GM149976NINDS NIH HHS R01 NS111039NINDS NIH HHS R21 NS125395
6 · The paper itself

Abstract

Lipids play crucial roles in many biological processes. Mapping spatial distributions and examining the metabolic dynamics of different lipid subtypes in cells and tissues are critical to better understanding their roles in aging and diseases. Commonly used imaging methods (such as mass spectrometry-based, fluorescence labeling, conventional optical imaging) can disrupt the native environment of cells/tissues, have limited spatial or spectral resolution, or cannot distinguish different lipid subtypes. Here we present a hyperspectral imaging platform that integrates a Penalized Reference Matching algorithm with Stimulated Raman Scattering (PRM-SRS) microscopy. Using this platform, we visualize and identify high density lipoprotein particles in human kidney, a high cholesterol to phosphatidylethanolamine ratio inside granule cells of mouse hippocampus, and subcellular distributions of sphingosine and cardiolipin in human brain. Our PRM-SRS displays unique advantages of enhanced chemical specificity, subcellular resolution, and fast data processing in distinguishing lipid subtypes in different organs and species.

Indexed as

MicroscopyNonlinear Optical MicroscopyAnimalsHumansLipidsMiceSpectrum Analysis, RamanLipids

Identifiers

PMID38383552
PMCPMC10881988
OpenAlexW4391993121

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.