Evidence map›Paper›PMID 38383305›Full record

ArticleBMC genomics2024

Transcriptomics and metabolomics of blood, urine and ovarian follicular fluid of yak at induced estrus stage.

Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu, Rong Huang, Jun Zhang, Huawei Su, Yang He, Chuzhao Lei and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Multi-Omics Reveals the Effects ofAntioxidants (Basel, Switzerland) · 2024
    Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Huangqing Zhao *Qinghai University, Xining, China.
Yongzhen Huang *Northwest A&F University, Yangling, Shaanxi, China.
Shi ShuQinghai University, Xining, China.
Guowen WangQinghai University, Xining, China.
Changqi FuQinghai University, Xining, China.
Rong HuangQinghai University, Xining, China.
Jun ZhangQinghai University, Xining, China.
Huawei SuChina Agricultural University, Beijing, China.
Yang HeChina Agricultural University, Beijing, China.
Chuzhao LeiNorthwest A&F University, Yangling, Shaanxi, China.
Lei DuNorthwest A&F University, Yangling, Shaanxi, China.
Jiahao ZhaoNorthwest A&F University, Yangling, Shaanxi, China.
Wei PengQinghai University, Xining, China. 498094692@qq.com.
Qinghai University · CNNorthwest A&F University · CNChina Agricultural University · CN

Funding

Key Technology Support Program of Qinghai Province 2021-ZJ-736
6 · The paper itself

Abstract

To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses on female yaks in both estrus and non-estrus states. The metabolome analysis identified 114, 13, and 91 distinct metabolites in urine, blood, and follicular fluid, respectively. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis highlighted an enrichment of pathways related to amino acid and lipid metabolism across all three body fluids. Our transcriptome analysis revealed 122 differentially expressed genes within microRNA (miRNA) and 640 within long non-coding RNA (lncRNA). Functional enrichment analysis of lncRNA and miRNA indicated their involvement in cell signaling, disease resistance, and immunity pathways. We constructed a regulatory network composed of 10 lncRNAs, 4 miRNAs, and 30 mRNAs, based on the targeted regulation relationships of the differentially expressed genes. In conclusion, the accumulation of metabolites such as amino acids, steroids, and organic acids, along with the expression changes of key genes like miR-129 during yak estrus, provide initial insights into the estrus mechanism in yaks.

Indexed as

MicroRNAsRNA, Long NoncodingAnimalsCattleEstrusFemaleFollicular FluidGene Expression ProfilingGene Regulatory NetworksTranscriptomeMicroRNAsRNA, Long NoncodingEstrusMetabolomeTranscriptomeYak

Identifiers

PMID38383305
PMCPMC10882836
OpenAlexW4392004398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.