Evidence map›Paper›PMID 38380056›Full record

ArticlePNAS nexus2024

Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth.

Lu Fan, Bu Xu, Songze Chen, Yang Liu, Fuyan Li, Wei Xie, Apoorva Prabhu, Dayu Zou, Ru Wan, Hongliang Li and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PNAS nexus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Lu FanShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.ORCID https://orcid.org/0000-0002-4184-7211
Bu XuShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.
Songze ChenShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.
Yang LiuArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID https://orcid.org/0000-0002-1109-0756
Fuyan LiDaniel K. Inouye Center for Microbial Oceanography: Research and Education (C-MORE), University of Hawaii, Honolulu, HI 96822, USA.ORCID https://orcid.org/0000-0003-2421-3767
Wei XieSchool of Marine Sciences, Sun Yat-sen University, Zhuhai, Guangdong 519082, China.ORCID https://orcid.org/0000-0003-4508-3041
Apoorva PrabhuAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia.ORCID https://orcid.org/0000-0002-1383-849X
Dayu ZouArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong 518060, China.
Ru WanState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan 570228, China.
Hongliang LiKey Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, Zhejiang 310012, China.ORCID https://orcid.org/0000-0002-9492-839X
Haodong LiuShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.
Yuhang LiuShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.
Shuh-Ji KaoState Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan 570228, China.
Jianfang ChenKey Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, Zhejiang 310012, China.
Yuanqing ZhuShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.
Christian RinkeAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia.ORCID https://orcid.org/0000-0003-4632-1187
Meng LiArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID https://orcid.org/0000-0001-8675-0758
Maoyan ZhuCollege of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.ORCID https://orcid.org/0000-0001-7327-9856
Chuanlun ZhangShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Engineering, Southern University of Science and Technology (SUSTech), Shenzhen, Guangdong 518055, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Land-ocean interactions greatly impact the evolution of coastal life on earth. However, the ancient geological forces and genetic mechanisms that shaped evolutionary adaptations and allowed microorganisms to inhabit coastal brackish waters remain largely unexplored. In this study, we infer the evolutionary trajectory of the ubiquitous heterotrophic archaea Poseidoniales (Marine Group II archaea) presently occurring across global aquatic habitats. Our results show that their brackish subgroups had a single origination, dated to over 600 million years ago, through the inversion of the magnesium transport gene

Indexed as

archaeal evolutionbrackish microorganismsgene inversionosmotic stressSnowball Earth

Identifiers

PMID38380056
PMCPMC10877094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.