Evidence map›Paper›PMID 38378731›Full record

ArticleNature communications2024

Cepharanthine analogs mining and genomes of Stephania accelerate anti-coronavirus drug discovery.

Liang Leng, Zhichao Xu, Bixia Hong, Binbin Zhao, Ya Tian, Can Wang, Lulu Yang, Zhongmei Zou, Lingyu Li, Ke Liu and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 1 country.

Liang Leng *Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.ORCID 0000-0002-9629-6808
Zhichao Xu *College of Life Science, Northeast Forestry University, Harbin, 150040, China.ORCID 0000-0003-1753-5602
Bixia Hong *College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.
Binbin Zhao *NHC Key Laboratory of Human Disease Comparative Medicine, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, 100730, China.ORCID 0000-0003-0214-2224
Ya TianCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Can WangInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Lulu YangInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Zhongmei ZouInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100193, China.
Lingyu LiInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100193, China.
Ke LiuCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.
Wanjun PengNHC Key Laboratory of Human Disease Comparative Medicine, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, 100730, China.
Jiangning LiuNHC Key Laboratory of Human Disease Comparative Medicine, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, 100730, China.
Zhoujie AnCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Yalin WangCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Baozhong DuanCollege of Pharmaceutical Science, Dali University, Dali, 671000, China.
Zhigang HuCollege of Pharmacy, Hubei University of Chinese Medicine, Wuhan, 430065, China.
Chuan ZhengHospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610072, China.
Sanyin ZhangInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Xiaodong LiWuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Maochen LiCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.ORCID 0000-0001-8786-5039
Zhaoyu LiuInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.ORCID 0000-0002-8081-4228
Zenghao BiInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Tianxing HeInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Baimei LiuInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
Huahao FanCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China. fanhuahao.1987@163.com.ORCID 0000-0001-5007-2158
Chi SongInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China. songchi@cdutcm.edu.cn.ORCID 0000-0003-3904-963X
Yigang TongCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China. tongyigang@mail.buct.edu.cn.ORCID 0000-0002-8503-8045
Shilin ChenInstitute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China. slchen@cdutcm.edu.cn.ORCID 0000-0002-0449-236X
Chengdu University of Traditional Chinese Medicine · CNBeijing University of Chemical Technology · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNNortheast Forestry University · CNChinese Academy of Sciences · CNDali University · CNHubei University of Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cepharanthine is a secondary metabolite isolated from Stephania. It has been reported that it has anti-conronaviruses activities including severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). Here, we assemble three Stephania genomes (S. japonica, S. yunnanensis, and S. cepharantha), propose the cepharanthine biosynthetic pathway, and assess the antiviral potential of compounds involved in the pathway. Among the three genomes, S. japonica has a near telomere-to-telomere assembly with one remaining gap, and S. cepharantha and S. yunnanensis have chromosome-level assemblies. Following by biosynthetic gene mining and metabolomics analysis, we identify seven cepharanthine analogs that have broad-spectrum anti-coronavirus activities, including SARS-CoV-2, Guangxi pangolin-CoV (GX_P2V), swine acute diarrhoea syndrome coronavirus (SADS-CoV), and porcine epidemic diarrhea virus (PEDV). We also show that two other genera, Nelumbo and Thalictrum, can produce cepharanthine analogs, and thus have the potential for antiviral compound discovery. Results generated from this study could accelerate broad-spectrum anti-coronavirus drug discovery.

Indexed as

AlphacoronavirusBenzodioxolesBenzylisoquinolinesStephaniaAnimalsAntiviral AgentsChinaSARS-CoV-2SwineAntiviral AgentsBenzodioxolesBenzylisoquinolinescepharanthine

Identifiers

PMID38378731
PMCPMC10879537
OpenAlexW4391987125

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.