Evidence map›Paper›PMID 38378719›Full record

ArticleNature communications2024

Genome-wide screens identify SEL1L as an intracellular rheostat controlling collagen turnover.

Michael J Podolsky, Benjamin Kheyfets, Monika Pandey, Afaq H Beigh, Christopher D Yang, Carlos O Lizama, Ritwik Datta, Liangguang L Lin, Zhihong Wang, Paul J Wolters and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 14 citations in OpenAlex.

  1. MnOMaterials today. Bio · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mechanobiology and Resolution of Lung Fibrosis.Annual review of physiology · 2026
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Pulmonary Fibrosis-Focusing on the Future: Aspen Lung Conference 2024 Summary.American journal of respiratory cell and molecular biology · 2025
    Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Michael J PodolskyDepartment of Medicine, Weill Cornell Medical College, New York, NY, USA. mip9227@med.cornell.edu.ORCID 0009-0008-0626-5110
Benjamin KheyfetsDepartment of Medicine, Weill Cornell Medical College, New York, NY, USA.
Monika PandeyDepartment of Medicine, Weill Cornell Medical College, New York, NY, USA.
Afaq H BeighDepartment of Medicine, Weill Cornell Medical College, New York, NY, USA.
Christopher D YangCardiovascular Research Institute, University of California, San Francisco, CA, USA.ORCID 0000-0002-2090-1880
Carlos O LizamaCardiovascular Research Institute, University of California, San Francisco, CA, USA.ORCID 0000-0002-0471-8525
Ritwik DattaCardiovascular Research Institute, University of California, San Francisco, CA, USA.
Liangguang L LinDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0003-1414-610X
Zhihong WangDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0002-5836-8073
Paul J WoltersDepartment of Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0002-3108-6164
Michael T McManusDepartment of Microbiology and Immunology and UCSF Diabetes Center, University of California, San Francisco, CA, USA.ORCID 0000-0003-3013-6569
Ling QiDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0001-8229-0184
Kamran AtabaiCardiovascular Research Institute, University of California, San Francisco, CA, USA. kamran.atabai@ucsf.edu.ORCID 0000-0001-8170-7881
University of California, San Francisco · USCornell University · USUniversity of Virginia · US

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
Regulation of Mitochondrial Dynamics by ERAD: Administrative SupplementR35GM130292 · NIGMS · UNIVERSITY OF VIRGINIA · PI QI, LING · 2019 to 2023
$2.5M
Investigating the role of cell-mediated collagen turnover in regulating tissue fibrosisR01HL136377 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ATABAI, KAMRAN · 2018 to 2021
$1.9M
Mechanisms of ER-Protein Quality Control in PodocytesR01DK132786 · NIDDK · UNIVERSITY OF VIRGINIA · PI Ling Qi · 2023 to 2026
$1.6M
Role of Endo180 Regulation in Tissue FibrosisK08HL145015 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI PODOLSKY, MICHAEL · 2019 to 2023
$853k
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
Combination CD-Fluorescence Polarization Spectrophotometer for the Columbia Precision Biomolecular Characterization FacilityS10OD025102 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HUNT, JOHN FRANCIS · 2018 to 2018
$138k
NHLBI NIH HHS K08 HL145015NHLBI NIH HHS R01 HL136377NIDDK NIH HHS P30 DK063720NIDDK NIH HHS R01 DK132786NIGMS NIH HHS R35 GM130292NIH HHS S10 OD021822NIH HHS S10 OD025102
6 · The paper itself

Abstract

Accumulating evidence has implicated impaired extracellular matrix (ECM) clearance as a key factor in fibrotic disease. Despite decades of research elucidating the effectors of ECM clearance, relatively little is understood regarding the upstream regulation of this process. Collagen is the most abundant constituent of normal and fibrotic ECM in mammalian tissues. Its catabolism occurs through extracellular proteolysis and cell-mediated uptake of collagen fragments for intracellular degradation. Given the paucity of information regarding the regulation of this latter process, here we execute unbiased genome-wide screens to understand the molecular underpinnings of cell-mediated collagen clearance. Using this approach, we discover a mechanism through which collagen biosynthesis is sensed by cells internally and directly regulates clearance of extracellular collagen. The sensing mechanism appears to be dependent on endoplasmic reticulum-resident protein SEL1L and occurs via a noncanonical function of this protein. This pathway functions as a homeostatic negative feedback loop that limits collagen accumulation in tissues. In human fibrotic lung disease, the induction of this collagen clearance pathway by collagen synthesis is impaired, thereby contributing to the pathological accumulation of collagen in lung tissue. Thus, we describe cell-autonomous, rheostatic collagen clearance as an important pathway of tissue homeostasis.

Indexed as

CollagenExtracellular MatrixAnimalsFibrosisHumansLungMammalsProteinsProteolysisCollagenProteinsSEL1L protein, human

Identifiers

PMID38378719
PMCPMC10879544
OpenAlexW4391958108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.