Evidence map›Paper›PMID 38378469›Full record

ArticleBMC genomics2024

Genetic control of abiotic stress-related specialized metabolites in sunflower.

Marco Moroldo, Nicolas Blanchet, Harold Duruflé, Stéphane Bernillon, Thierry Berton, Olivier Fernandez, Yves Gibon, Annick Moing, Nicolas B Langlade

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marco MoroldoUMR LIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet Tolosan, France. marco.moroldo@inrae.fr.
Nicolas BlanchetUMR LIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet Tolosan, France.
Harold DurufléUMR LIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet Tolosan, France.
Stéphane BernillonUMR BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Thierry BertonUMR BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Olivier FernandezUMR BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Yves GibonUMR BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Annick MoingUMR BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Nicolas B LangladeUMR LIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet Tolosan, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAbiotic stresses in plants include all the environmental conditions that significantly reduce yields, like drought and heat. One of the most significant effects they exert at the cellular level is the accumulation of reactive oxygen species, which cause extensive damage. Plants possess two mechanisms to counter these molecules, i.e. detoxifying enzymes and non-enzymatic antioxidants, which include many classes of specialized metabolites. Sunflower, the fourth global oilseed, is considered moderately drought resistant. Abiotic stress tolerance in this crop has been studied using many approaches, but the control of specialized metabolites in this context remains poorly understood. Here, we performed the first genome-wide association study using abiotic stress-related specialized metabolites as molecular phenotypes in sunflower. After analyzing leaf specialized metabolites of 450 hybrids using liquid chromatography-mass spectrometry, we selected a subset of these compounds based on their association with previously known abiotic stress-related quantitative trait loci. Eventually, we characterized these molecules and their associated genes.

resultsWe putatively annotated 30 compounds which co-localized with abiotic stress-related quantitative trait loci and which were associated to seven most likely candidate genes. A large proportion of these compounds were potential antioxidants, which was in agreement with the role of specialized metabolites in abiotic stresses. The seven associated most likely candidate genes, instead, mainly belonged to cytochromes P450 and glycosyltransferases, two large superfamilies which catalyze greatly diverse reactions and create a wide variety of chemical modifications. This was consistent with the high plasticity of specialized metabolism in plants.

conclusionsThis is the first characterization of the genetic control of abiotic stress-related specialized metabolites in sunflower. By providing hints concerning the importance of antioxidant molecules in this biological context, and by highlighting some of the potential molecular mechanisms underlying their biosynthesis, it could pave the way for novel applications in breeding. Although further analyses will be required to better understand this topic, studying how antioxidants contribute to the tolerance to abiotic stresses in sunflower appears as a promising area of research.

Indexed as

HelianthusAntioxidantsGene Expression Regulation, PlantGenome-Wide Association StudyPlant BreedingPlantsStress, PhysiologicalAntioxidantsAbiotic stressesAntioxidantsGenome-wide association studyLiquid chromatography-mass spectrometryMetabolomeReactive oxygen speciesSpecialized metabolitesSunflower (Helianthus annuus)

Identifiers

PMID38378469
PMCPMC10877922

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.