Evidence map›Paper›PMID 38377132›Full record

ArticlePLoS pathogens2024

Amino acid 138 in the HA of a H3N2 subtype influenza A virus increases affinity for the lower respiratory tract and alveolar macrophages in pigs.

Matias Cardenas, Brittany Seibert, Brianna Cowan, Ana Luiza S Fraiha, Silvia Carnaccini, L Claire Gay, Flavio Cargnin Faccin, C Joaquin Caceres, Tavis K Anderson, Amy L Vincent Baker and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Matias CardenasDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Brittany SeibertDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Brianna CowanDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Ana Luiza S FraihaDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Silvia CarnacciniDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
L Claire GayDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Flavio Cargnin FaccinDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
C Joaquin CaceresDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Tavis K AndersonVirus and Prion Research Unit, National Animal Disease Center, United States Department of Agriculture, Agricultural Research Service, Ames, Iowa, United States of America.
Amy L Vincent BakerVirus and Prion Research Unit, National Animal Disease Center, United States Department of Agriculture, Agricultural Research Service, Ames, Iowa, United States of America.
Daniel R PerezDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
Daniela S RajaoDepartment of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.ORCID 0000-0002-0772-0065
University of Georgia · USAgricultural Research Service · US

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00015 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HENSLEY, SCOTT · 2021 to 2025
$50.7M
Malaria and Mosquito/Tick-borne DiseasesT32AI138953 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DAVID Joseph SULLIVAN · 2019 to 2026
$2.0M
NIAID NIH HHS 75N93021C00014NIAID NIH HHS 75N93021C00015
6 · The paper itself

Abstract

Influenza A virus (FLUAV) infects a wide range of hosts and human-to-swine spillover events are frequently reported. However, only a few of these human viruses have become established in pigs and the host barriers and molecular mechanisms driving adaptation to the swine host remain poorly understood. We previously found that infection of pigs with a 2:6 reassortant virus (hVIC/11) containing the hemagglutinin (HA) and neuraminidase (NA) gene segments from the human strain A/Victoria/361/2011 (H3N2) and internal gene segments of an endemic swine strain (sOH/04) resulted in a fixed amino acid substitution in the HA (A138S, mature H3 HA numbering). In silico analysis revealed that S138 became predominant among swine H3N2 virus sequences deposited in public databases, while 138A predominates in human isolates. To understand the role of the HA A138S substitution in the adaptation of a human-origin FLUAV HA to swine, we infected pigs with the hVIC/11A138S mutant and analyzed pathogenesis and transmission compared to hVIC/11 and sOH/04. Our results showed that the hVIC/11A138S virus had an intermediary pathogenesis between hVIC/11 and sOH/04. The hVIC/11A138S infected the upper respiratory tract, right caudal, and both cranial lobes while hVIC/11 was only detected in nose and trachea samples. Viruses induced a distinct expression pattern of various pro-inflammatory cytokines such as IL-8, TNF-α, and IFN-β. Flow cytometric analysis of lung samples revealed a significant reduction of porcine alveolar macrophages (PAMs) in hVIC/11A138S-infected pigs compared to hVIC/11 while a MHCIIlowCD163neg population was increased. The hVIC/11A138S showed a higher affinity for PAMs than hVIC/11, noted as an increase of infected PAMs in bronchoalveolar lavage fluid (BALF), and showed no differences in the percentage of HA-positive PAMs compared to sOH/04. This increased infection of PAMs led to an increase of granulocyte-monocyte colony-stimulating factor (GM-CSF) stimulation but a reduced expression of peroxisome proliferator-activated receptor gamma (PPARγ) in the sOH/04-infected group. Analysis using the PAM cell line 3D4/21 revealed that the A138S substitution improved replication and apoptosis induction in this cell type compared to hVIC/11 but at lower levels than sOH/04. Overall, our study indicates that adaptation of human viruses to the swine host involves an increased affinity for the lower respiratory tract and alveolar macrophages.

Indexed as

Influenza A virusInfluenza A Virus, H3N2 SubtypeAmino AcidsAnimalsHemagglutininsHumansMacrophages, AlveolarNoseSwineAmino AcidsHemagglutinins

Identifiers

PMID38377132
PMCPMC10906893
OpenAlexW4391960758

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.