Evidence map›Paper›PMID 38373903›Full record

ArticleBMC genomics2024

A genome-wide study of the lipoxygenase gene families in Medicago truncatula and Medicago sativa reveals that MtLOX24 participates in the methyl jasmonate response.

Lei Xu, Xiaoxi Zhu, Fengyan Yi, Yajiao Liu, Bilig Sod, Mingna Li, Lin Chen, Junmei Kang, Qingchuan Yang, Ruicai Long

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Genome-wide identification and characterization ofFrontiers in plant science · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Lei Xu *Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Xiaoxi Zhu *Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Fengyan YiInner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, 010031, China.
Yajiao LiuInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Bilig SodInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Mingna LiInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Lin ChenInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Junmei KangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Qingchuan YangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Ruicai LongInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. dragongodsgod@163.com.
Chinese Academy of Agricultural Sciences · CNInstitute of Animal Sciences · CNInner Mongolia Academy of Agricultural & Animal Husbandry Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLipoxygenase (LOX) is a multifunctional enzyme that is primarily related to plant organ growth and development, biotic and abiotic stress responses, and production of flavor-associated metabolites. In higher plants, the LOX family encompasses several isozymes with varying expression patterns between tissues and developmental stages. These affect processes including seed germination, seed storage, seedling growth, fruit ripening, and leaf senescence. LOX family genes have multiple functions in response to hormones such as methyl jasmonate (MeJA) and salicylic acid.

resultsIn this study, we identified 30 and 95 LOX homologs in Medicago truncatula and Medicago sativa, respectively. These genes were characterized with analyses of their basic physical and chemical properties, structures, chromosomal distributions, and phylogenetic relationships to understand structural variations and their physical locations. Phylogenetic analysis was conducted for members of the three LOX subfamilies (9-LOX, type I 13-LOX, and type II 13-LOX) in Arabidopsis thaliana, Glycine max, M. truncatula, and M. sativa. Analysis of predicted promoter elements revealed several relevant cis-acting elements in MtLOX and MsLOX genes, including abscisic acid (ABA) response elements (ABREs), MeJA response elements (CGTCA-motifs), and antioxidant response elements (AREs). Cis-element data combined with transcriptomic data demonstrated that LOX gene family members in these species were most likely related to abiotic stress responses, hormone responses, and plant development. Gene expression patterns were confirmed via quantitative reverse transcription PCR. Several MtLOX genes (namely MtLOX15, MtLOX16, MtLOX20, and MtLOX24) belonging to the type I 13-LOX subfamily and other LOX genes (MtLOX7, MtLOX11, MsLOX23, MsLOX87, MsLOX90, and MsLOX94) showed significantly different expression levels in the flower tissue, suggesting roles in reproductive growth. Type I 13-LOXs (MtLOX16, MtLOX20, MtLOX21, MtLOX24, MsLOX57, MsLOX84, MsLOX85, and MsLOX94) and type II 13-LOXs (MtLOX5, MtLOX6, MtLOX9, MtLOX10, MsLOX18, MsLOX23, and MsLOX30) were MeJA-inducible and were predicted to function in the jasmonic acid signaling pathway. Furthermore, exogenous MtLOX24 expression in Arabidopsis verified that MtLOX24 was involved in MeJA responses, which may be related to insect-induced abiotic stress.

conclusionsWe identified six and four LOX genes specifically expressed in the flowers of M. truncatula and M. sativa, respectively. Eight and seven LOX genes were induced by MeJA in M. truncatula and M. sativa, and the LOX genes identified were mainly distributed in the type I and type II 13-LOX subfamilies. MtLOX24 was up-regulated at 8 h after MeJA induction, and exogenous expression in Arabidopsis demonstrated that MtLOX24 promoted resistance to MeJA-induced stress. This study provides valuable new information regarding the evolutionary history and functions of LOX genes in the genus Medicago.

Indexed as

AcetatesArabidopsisCyclopentanesMedicago truncatulaOxylipinsGene Expression Regulation, PlantGenome-Wide Association StudyHormonesMedicago sativaPhylogenyPlant ProteinsStress, PhysiologicalAcetatesCyclopentanesHormonesmethyl jasmonateOxylipinsPlant ProteinsArabidopsis thalianaLipoxygenaseMedicagoMethyl jasmonateOverexpression

Identifiers

PMID38373903
PMCPMC10875803
OpenAlexW4391926955

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.