Evidence map›Paper›PMID 38372612›Full record

ArticlePlant & cell physiology2024

Involvement of Peptidoglycan Receptor Proteins in Mediating the Growth-Promoting Effects of Bacillus pumilus TUAT1 in Arabidopsis thaliana.

Md Monirul Islam, Shin-Ichiro Agake, Takehiro Ito, Safiullah Habibi, Michiko Yasuda, Tetsuya Yamada, Gary Stacey, Naoko Ohkama-Ohtsu

Open access · hybridAbstract read
In one paragraph

Article in Plant & cell physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Md Monirul IslamPlant Biotechnology and Genetic Engineering Division, Institute of Food and Radiation Biology, Bangladesh Atomic Energy Commission, Dhaka 1207, Bangladesh.ORCID 0000-0002-4719-1938
Shin-Ichiro AgakeInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan.
Takehiro ItoUnited Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan.ORCID 0000-0002-7136-4026
Safiullah HabibiInstitute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwaicho, Fuchu-shi, Tokyo, 183-8509 Japan.
Michiko YasudaInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan.
Tetsuya YamadaInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan.
Gary StaceyInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan.ORCID 0000-0001-5914-2247
Naoko Ohkama-OhtsuInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1 Harumicho, Fuchu-shi, Tokyo, 183-8538 Japan.ORCID 0000-0001-6540-0097
Tokyo University of Agriculture and Technology · JPUniversity of Missouri · US

Funding

Japan Science and Technology Corporation JPMJPF2104Japan Society for the Promotion of Science 23KK0107
6 · The paper itself

Abstract

Bacillus pumilus TUAT1 acts as plant growth-promoting rhizobacteria for various plants like rice and Arabidopsis. Under stress conditions, B. pumilus TUAT1 forms spores with a thick peptidoglycan (PGN) cell wall. Previous research showed that spores were significantly more effective than vegetative cells in enhancing plant growth. In Arabidopsis, lysin motif proteins, LYM1, LYM3 and CERK1, are required for recognizing bacterial PGNs to mediate immunity. Here, we examined the involvement of PGN receptor proteins in the plant growth promotion (PGP) effects of B. pumilus TUAT1 using Arabidopsis mutants defective in PGN receptors. Root growth of wild-type (WT), cerk1-1, lym1-1 and lym1-2 mutant plants was significantly increased by TUAT1 inoculation, but this was not the case for lym3-1 and lym3-2 mutant plants. RNA-seq analysis revealed that the expression of a number of defense-related genes was upregulated in lym3 mutant plants. These results suggested that B. pumilus TUAT1 may act to reduce the defense response, which is dependent on a functional LYM3. The expression of the defense-responsive gene, WRKY29, was significantly induced by the elicitor flg-22, in both WT and lym3 mutant plants, while this induction was significantly reduced by treatment with B. pumilus TUAT1 and PGNs in WT, but not in lym3 mutant plants. These findings suggest that the PGNs of B. pumilus TUAT1 may be recognized by the LYM3 receptor protein, suppressing the defense response, which results in plant growth promotion in a trade-off between defense and growth.

Indexed as

ArabidopsisArabidopsis ProteinsBacillus pumilusGene Expression Regulation, PlantPeptidoglycanMutationPlant ImmunityPlant RootsArabidopsis ProteinsPeptidoglycanBacillus pumilus TUAT1Microbe-associated molecular patternsPattern recognition receptorsPeptidoglycansRNA-seq

Identifiers

PMID38372612
PMCPMC11138354
OpenAlexW4391926252

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.