Evidence map›Paper›PMID 38372567›Full record

ArticleJournal of cellular and molecular medicine2024

The impact of genomic distance on enhancer-promoter interactions at the CFTR locus.

Jenny L Kerschner, Frederick Meckler, Giuliana C Coatti, Nirbhayaditya Vaghela, Alekh Paranjapye, Ann Harris

Open access · goldAbstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. [Detection of pathogenic gene mutations in thirteen cases of congenital bilateral absence of vas deferens infertility patients].Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jenny L KerschnerDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0002-1980-2543
Frederick MecklerDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0009-0009-5534-9991
Giuliana C CoattiDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0001-8140-8400
Nirbhayaditya VaghelaDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0009-0003-9386-7753
Alekh ParanjapyeDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0002-4069-1761
Ann HarrisDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0002-6541-2546
Case Western Reserve University · US

Funding

Cystic Fibrosis Foundation Davis 19XX0Cystic Fibrosis Foundation Harris 23XX0
6 · The paper itself

Abstract

We identified and characterized multiple cell-type selective enhancers of the CFTR gene promoter in previous work and demonstrated active looping of these elements to the promoter. Here we address the impact of genomic spacing on these enhancer:promoter interactions and on CFTR gene expression. Using CRISPR/Cas9, we generated clonal cell lines with deletions between the -35 kb airway enhancer and the CFTR promoter in the 16HBE14o

Indexed as

Cystic Fibrosis Transmembrane Conductance RegulatorGene Expression RegulationCaco-2 CellsChromatinEnhancer Elements, GeneticGenomicsHumansCFTR protein, humanChromatinCystic Fibrosis Transmembrane Conductance Regulator4C-seqchromatin structuregene editing therapeuticsgene expressionpromoter interactions

Identifiers

PMID38372567
PMCPMC10875976
OpenAlexW4391931030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.