Evidence map›Paper›PMID 38370815›Full record

ArticlebioRxiv : the preprint server for biology2024

Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium.

Vanessa Barone, Antonio Tagua, Jesus Á Andrés-San Román, Amro Hamdoun, Juan Garrido-García, Deirdre C Lyons, Luis M Escudero

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Vanessa BaroneCenter for Marine Biotechnology and Biomedicine, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0003-2676-3367
Antonio TaguaInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla. 41013 Seville, Spain.ORCID 0000-0001-5743-2400
Jesus Á Andrés-San RománInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla. 41013 Seville, Spain.ORCID 0000-0003-3197-5014
Amro HamdounCenter for Marine Biotechnology and Biomedicine, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0003-2568-048X
Juan Garrido-GarcíaInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla. 41013 Seville, Spain.ORCID 0000-0003-4116-3546
Deirdre C LyonsCenter for Marine Biotechnology and Biomedicine, University of California San Diego, La Jolla, CA, 92093, USA.
Luis M EscuderoInstituto de Biomedicina de Sevilla (IBiS), Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla and Departamento de Biología Celular, Facultad de Biología, Universidad de Sevilla. 41013 Seville, Spain.ORCID 0000-0001-8030-1820
Instituto de Biomedicina de Sevilla · ESUniversity of California San Diego · USBiomedical Research Networking Center on Neurodegenerative Diseases · ES

Funding

Building a gene regulatory network-based model for cell fate specification and morphogenesis using a new mollusc model.R35GM133673 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LYONS, DEIRDRE C · 2019 to 2023
$2.0M
NIGMS NIH HHS R35 GM133673
6 · The paper itself

Abstract

Tissue morphogenesis is intimately linked to the changes in shape and organisation of individual cells. In curved epithelia, cells can intercalate along their own apicobasal axes adopting a shape named "scutoid" that allows energy minimization in the tissue. Although several geometric and biophysical factors have been associated with this 3D reorganisation, the dynamic changes underlying scutoid formation in 3D epithelial packing remain poorly understood. Here we use live-imaging of the sea star embryo coupled with deep learning-based segmentation, to dissect the relative contributions of cell density, tissue compaction, and cell proliferation on epithelial architecture. We find that tissue compaction, which naturally occurs in the embryo, is necessary for the appearance of scutoids. Physical compression experiments identify cell density as the factor promoting scutoid formation at a global level. Finally, the comparison of the developing embryo with computational models indicates that the increase in the proportion of scutoids is directly associated with cell divisions. Our results suggest that apico-basal intercalations appearing just after mitosis may help accommodate the new cells within the tissue. We propose that proliferation in a compact epithelium induces 3D cell rearrangements during development.

Indexed as

3D epithelial packingAB-T1computational modellingdeep-learningechinoderm embryomorphogenesisscutoidsea star

Identifiers

PMID38370815
PMCPMC10871321
OpenAlexW4391684816

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.