Evidence map›Paper›PMID 38370650›Full record

ArticlebioRxiv : the preprint server for biology2024

Identifying Interpretable Latent Factors with Sparse Component Analysis.

Andrew J Zimnik, K Cora Ames, Xinyue An, Laura Driscoll, Antonio H Lara, Abigail A Russo, Vladislav Susoy, John P Cunningham, Liam Paninski, Mark M Churchland and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Andrew J ZimnikDepartment of Neuroscience, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0002-8313-2476
K Cora AmesDepartment of Neuroscience, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0003-0657-0162
Xinyue AnDepartment of Neurology, Northwestern University, Chicago, IL, USA.
Laura DriscollDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Antonio H LaraDepartment of Neuroscience, Columbia University Medical Center, New York, NY, USA.
Abigail A RussoDepartment of Neuroscience, Columbia University Medical Center, New York, NY, USA.ORCID 0000-0001-7751-3355
Vladislav SusoyDepartment of Physics, Harvard University, Cambridge, MA, USA.ORCID 0000-0002-0669-0087
John P CunninghamZuckerman Institute, Columbia University, New York, NY, USA.
Liam PaninskiZuckerman Institute, Columbia University, New York, NY, USA.
Mark M ChurchlandDepartment of Neuroscience, Columbia University Medical Center, New York, NY, USA.
Joshua I GlaserDepartment of Neurology, Northwestern University, Chicago, IL, USA.

Funding

State-dependent Decision-making in Brainwide Neural CircuitsU19NS123716 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ZADOR, ANTHONY M · 2021 to 2025
$18.2M
Modeling multi-area dynamics during motor controlU19NS104649 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI COSTA, RUI M. · 2017 to 2021
$15.3M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Neural representation of mating partners by male C. elegansR01NS113119 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI LINDERMAN, SCOTT WARREN, SAMUEL, ARAVINTHAN D. · 2019 to 2023
$3.3M
A dynamical systems approach to fundamental questions in neuroscienceDP2NS083037 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHURCHLAND, MARK M · 2012 to 2014
$2.6M
Determining the Sources of Motor-Cortex Response ComplexityR01NS135240 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Mark M Churchland · 2024 to 2026
$1.9M
CRCNS: Understanding flexible neural computations in the motor cortexR01NS100066 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CUNNINGHAM, JOHN PATRICK · 2016 to 2018
$937k
Interpretable machine learning for understanding the neural control of movementR00NS119787 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GLASER, JOSHUA I · 2023 to 2025
$673k
NEI NIH HHS P30 EY019007NINDS NIH HHS DP2 NS083037NINDS NIH HHS R00 NS119787NINDS NIH HHS R01 NS100066NINDS NIH HHS R01 NS113119NINDS NIH HHS R01 NS135240NINDS NIH HHS U19 NS104649NINDS NIH HHS U19 NS123716
6 · The paper itself

Abstract

In many neural populations, the computationally relevant signals are posited to be a set of 'latent factors' - signals shared across many individual neurons. Understanding the relationship between neural activity and behavior requires the identification of factors that reflect distinct computational roles. Methods for identifying such factors typically require supervision, which can be suboptimal if one is unsure how (or whether) factors can be grouped into distinct, meaningful sets. Here, we introduce Sparse Component Analysis (SCA), an unsupervised method that identifies interpretable latent factors. SCA seeks factors that are sparse in time and occupy orthogonal dimensions. With these simple constraints, SCA facilitates surprisingly clear parcellations of neural activity across a range of behaviors. We applied SCA to motor cortex activity from reaching and cycling monkeys, single-trial imaging data from

Identifiers

PMID38370650
PMCPMC10871230

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.