Evidence map›Paper›PMID 38370015›Full record

ArticleFrontiers in physiology2024

Modeling the SDF-1/CXCR4 protein using advanced artificial intelligence and antagonist screening for Japanese anchovy.

Issei Yahiro, Kyle Dominic Eguid Barnuevo, Oga Sato, Sipra Mohapatra, Atsushi Toyoda, Takehiko Itoh, Kaoru Ohno, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Issei YahiroLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Kyle Dominic Eguid BarnuevoLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Oga SatoLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Sipra MohapatraLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Atsushi ToyodaAdvanced Genomics Center, National Institute of Genetics, Shizuoka, Japan.
Takehiko ItohSchool and Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Kanagawa, Japan.
Kaoru OhnoNational Institute for Basic Biology (NIBB), Aichi, Japan.
Michiya MatsuyamaAqua-Bioresource Innovation Center, Kyushu University, Saga, Japan.
Tapas ChakrabortyLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Kohei OhtaLaboratory of Marine Biology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Kyushu University · JPNational Institute for Basic Biology · JPNational Institute of Genetics · JPTokyo Institute of Technology · JP

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

SDF-1/CXCR4 chemokine signaling are indispensable for cell migration, especially the Primordial Germ Cell (PGC) migration towards the gonadal ridge during early development. We earlier found that this signaling is largely conserved in the Japanese anchovy (

Indexed as

Alpha FoldCB DockColab FoldJapanese anchovyPGCSDF-1/CXCR4

Identifiers

PMID38370015
PMCPMC10869568
OpenAlexW4391482519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.