Evidence map›Paper›PMID 38369982›Full record

ArticleApplications in plant sciences

Orchid fruit and root movement analyzed using 2D photographs and a bioinformatics pipeline for processing sequential 3D scans.

Dewi Pramanik, Lotta Vaskimo, K Joost Batenburg, Alexander Kostenko, Kevin Droppert, Erik Smets, Barbara Gravendeel

Open access · goldAbstract read
In one paragraph

Article in Applications in plant sciences. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Dewi PramanikEvolutionary Ecology Naturalis Biodiversity Center Darwinweg 2 2333 CR Leiden The Netherlands.ORCID 0000-0002-6781-774X
Lotta VaskimoFaculty of Science and Technology University of Applied Sciences Leiden Zernikedreef 11 2333 CK Leiden The Netherlands.ORCID 0009-0002-7412-2169
K Joost BatenburgLeiden Institute of Advanced Computer Science, Faculty of Science Leiden University, Snellius Niels Bohrweg 1 2333 CA Leiden The Netherlands.
Alexander KostenkoComputational Imaging Centrum Wiskunde en Informatica Science Park 123 1090 GB Amsterdam The Netherlands.
Kevin DroppertFaculty of Science and Technology University of Applied Sciences Leiden Zernikedreef 11 2333 CK Leiden The Netherlands.
Erik SmetsEvolutionary Ecology Naturalis Biodiversity Center Darwinweg 2 2333 CR Leiden The Netherlands.ORCID 0000-0002-9416-983X
Barbara GravendeelEvolutionary Ecology Naturalis Biodiversity Center Darwinweg 2 2333 CR Leiden The Netherlands.ORCID 0000-0002-6508-0895
Leiden University · NLUniversity of Applied Sciences Leiden · NLCentrum Wiskunde & Informatica · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Premise: Most studies of the movement of orchid fruits and roots during plant development have focused on morphological observations; however, further genetic analysis is required to understand the molecular mechanisms underlying this phenomenon. A precise tool is required to observe these movements and harvest tissue at the correct position and time for transcriptomics research. Methods: We utilized three-dimensional (3D) micro-computed tomography (CT) scans to capture the movement of fast-growing Results: The Discussion: Our methods revealed that each orchid root and fruit had an independent direction and degree of torsion from the initial to the final position. Our innovative approaches produced detailed spatial and temporal information on the resupination of roots and fruits during orchid development.

Indexed as

Erycina pusillafruitshigh‐precision laser scanningPhalaenopsis equestrisplant growthresupinationrootstwisting

Identifiers

PMID38369982
PMCPMC10873816
OpenAlexW4391681164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.