Evidence map›Paper›PMID 38369650›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2024

Identification and characterization of candidate genes for primary root length in Asiatic cotton (Gossypium arboreum L.).

Daowu Hu, Zibo Zhao, Mian Faisal Nazir, Gaofei Sun, Zhen Peng, Yinhua Jia, Xiaoli Geng, Liru Wang, Zhaoe Pan, Hongge Li and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Daowu Hu *Institute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Zibo Zhao *School of Agriculture Sciences, Zhengzhou University, Zhengzhou, Henan, 450000, China.
Mian Faisal NazirInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Gaofei SunAnyang Institute of Technology, Anyang, 455000, China.
Zhen PengInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Yinhua JiaInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Xiaoli GengInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Liru WangInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Zhaoe PanInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Hongge LiInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Baojun ChenInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Fenglei SunInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China.
Shoupu HeInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China. zephyr0911@126.com.
Xiongming DuInstitute of Cotton Research of Chinese Academy of Agricultural Sciences/National Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Anyang Henan, 455000, China. duxiongminglab@caas.cn.ORCID http://orcid.org/0000-0003-1704-2568
Cotton Research Institute · CNAnyang Institute of Technology · CNZhengzhou University · CN

Funding

Hainan Yazhou bay science and technology project SKJC-2021-02-001
6 · The paper itself

Abstract

key messageOne major gene controlling primary root length (PRL) in Gossypium arboreum is identified and this research provides a theoretical basis for root development for cotton. Primary root elongation is an essential process in plant root system structure. Here, we investigated the primary root length (PRL) of 215 diploid cotton (G. arboreum) accessions at 5, 8, 10, 15 days after sowing. A Genome-wide association study was performed for the PRL, resulting in 49 significant SNPs associated with 32 putative candidate genes. The SNP with the strongest signal (Chr07_8047530) could clearly distinguish the PRLs between accessions with two haplotypes. GamurG is the only gene that showed higher relative expression in the long PRL genotypes than the short PRL genotypes, which indicated it was the most likely candidate gene for regulating PRL. Moreover, the GamurG-silenced cotton seedlings showed a shorter PRL, while the GamurG-overexpressed Arabidopsis exhibited a significantly longer PRL. Our findings provide insight into the regulation mechanism of cotton root growth and will facilitate future breeding programs to optimize the root system structure in cotton.

Indexed as

Genome-Wide Association StudyGossypiumGene Expression Regulation, PlantGenotypeHaplotypesPlant Breeding

Identifiers

PMID38369650
OpenAlexW4391928804

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.