Evidence map›Paper›PMID 38368431›Full record

ArticleScientific data2024

The draft genome of Spiraea crenata L. (Rosaceae) - the first complete genome in tribe Spiraeeae.

Levente Laczkó, Sándor Jordán, Szilárd Póliska, Hanna Viktória Rácz, Nikoletta Andrea Nagy, Attila Molnár V, Gábor Sramkó

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Levente LaczkóDepartment of Metagenomics, University of Debrecen, Debrecen, Hungary.
Sándor JordánDepartment of Metagenomics, University of Debrecen, Debrecen, Hungary.
Szilárd PóliskaDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.ORCID 0000-0002-9722-251X
Hanna Viktória RáczDepartment of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.
Nikoletta Andrea NagyDepartment of Evolutionary Zoology and Human Biology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.
Attila Molnár VHUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary.
Gábor SramkóHUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary. sramko.gabor@science.unideb.hu.ORCID 0000-0001-8588-6362

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spiraea crenata L. is a deciduous shrub distributed across the Eurasian steppe zone. The species is of cultural and horticultural importance and occurs in scattered populations throughout its westernmost range. Currently, there is no genomic information on the tribe of Spiraeeae. Therefore we sequenced and assembled the whole genome of S. crenata using second- and third-generation sequencing and a hybrid assembly approach to expand genomic resources for conservation and support research on this horticulturally important lineage. In addition to the organellar genomes (the plastome and the mitochondrion), we present the first draft genome of the species with an estimated size of 220 Mbp, an N50 value of 7.7 Mbp, and a BUSCO score of 96.0%. Being the first complete genome in tribe Spiraeeae, this may not only be the first step in the genomic study of a rare plant but also a contribution to genomic resources supporting the study of biodiversity and evolutionary history of Rosaceae.

Indexed as

Genome, PlantSpiraeaGenomicsWhole Genome Sequencing

Identifiers

PMID38368431
PMCPMC10874383

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.