Evidence map›Paper›PMID 38366574›Full record

ArticleMolecular biology and evolution2024

A Critical Appraisal of DNA Transfer from Plants to Parasitic Cyst Nematodes.

Itsuhiro Ko, Olaf Prosper Kranse, Beatrice Senatori, Sebastian Eves-van den Akker

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Itsuhiro KoDepartment of Plant Sciences, The Crop Science Centre, University of Cambridge, Cambridge CB2 3EA, UK.
Olaf Prosper KranseDepartment of Plant Sciences, The Crop Science Centre, University of Cambridge, Cambridge CB2 3EA, UK.
Beatrice SenatoriDepartment of Plant Sciences, The Crop Science Centre, University of Cambridge, Cambridge CB2 3EA, UK.
Sebastian Eves-van den AkkerDepartment of Plant Sciences, The Crop Science Centre, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0002-8833-9679
University of Cambridge · GB

Funding

BBSRC BB/R011311/1British Society for Plant PathologyUKRI EP/X024008/1University of Cambridge 125034/359149/3
6 · The paper itself

Abstract

Plant-parasitic nematodes are one of the most economically important pests of crops. It is widely accepted that horizontal gene transfer-the natural acquisition of foreign genes in parasitic nematodes-contributes to parasitism. However, an apparent paradox has emerged from horizontal gene transfer analyses: On the one hand, distantly related organisms with very dissimilar genetic structures (i.e. bacteria), and only transient interactions with nematodes as far as we know, dominate the list of putative donors, while on the other hand, considerably more closely related organisms (i.e. the host plant), with similar genetic structure (i.e. introns) and documented long-term associations with nematodes, are rare among the list of putative donors. Given that these nematodes ingest cytoplasm from a living plant cell for several weeks, there seems to be a conspicuous absence of plant-derived cases. Here, we used comparative genomic approaches to evaluate possible plant-derived horizontal gene transfer events in plant parasitic nematodes. Our evidence supports a cautionary message for plant-derived horizontal gene transfer cases in the sugar beet cyst nematode, Heterodera schachtii. We propose a 4-step model for horizontal gene transfer from plant to parasite in order to evaluate why the absence of plant-derived horizontal gene transfer cases is observed. We find that the plant genome is mobilized by the nematode during infection, but that uptake of the said "mobilome" is the first major barrier to horizontal gene transfer from host to nematode. These results provide new insight into our understanding of the prevalence/role of nucleic acid exchange in the arms race between plants and plant parasites.

Indexed as

PlantsTylenchoideaAnimalsDNAGenomicsPlant DiseasesDNAcyst nematodeshorizontal gene transferplant-parasitic nematodes

Identifiers

PMID38366574
PMCPMC10899095
OpenAlexW4391898092

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.