Evidence map›Paper›PMID 38364257›Full record

ReviewJournal of agricultural and food chemistry2024

High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood.

Ana G Abril, Pilar Calo-Mata, Tomás G Villa, Karola Böhme, Jorge Barros-Velázquez, Ángeles Sánchez-Pérez, Manuel Pazos, Mónica Carrera

Open access · greenAbstract readReview
In one paragraph

Review in Journal of agricultural and food chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 6 countries.

Ana G AbrilDepartment of Food Technology, Spanish National Research Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain.
Pilar Calo-MataDepartment of Analytical Chemistry, Nutrition and Food Science, Food Technology Division, School of Veterinary Sciences, University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain.
Tomás G VillaDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Santiago de Compostela, 15898 Santiago de Compostela, Spain.
Karola BöhmeDepartment of Analytical Chemistry, Nutrition and Food Science, Food Technology Division, School of Veterinary Sciences, University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain.
Jorge Barros-VelázquezDepartment of Analytical Chemistry, Nutrition and Food Science, Food Technology Division, School of Veterinary Sciences, University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain.
Ángeles Sánchez-PérezSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW 2006, Australia.
Manuel PazosDepartment of Food Technology, Spanish National Research Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain.
Mónica CarreraDepartment of Food Technology, Spanish National Research Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain.ORCID 0000-0003-2973-449X
Universidade de Santiago de Compostela · ESConsejo Superior de Investigaciones Científicas · ESThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The presence of biogenic amines (histamine, tyramine, putrescine, and cadaverine) in seafood is a significant concern for food safety. This review describes for the first time a shotgun quantitative proteomics strategy to evaluate and compare foodborne strains of bacteria that produce biogenic amines in seafoods. This approach recognized 35,621 peptide spectrum matches, belonging to 20,792 peptides, and 4621 proteins. It allowed the determination of functional pathways and the classification of the strains into hierarchical clusters. The study identified a protein-protein interaction network involving 1160 nodes/10,318 edges. Proteins were related to energy pathways, spermidine biosynthesis, and putrescine metabolism. Label-free quantitative proteomics allowed the identification of differentially regulated proteins in specific strains such as putrescine aminotransferase, arginine decarboxylase, and l-histidine-binding protein. Additionally, 123 peptides were characterized as virulence factors and 299 peptide biomarkers were selected to identify bacterial species in fish products. This study presents the most extensive proteomic repository and progress in the science of food biogenic bacteria and could be applied in the food industry for the detection of bacterial contamination that produces histamine and other biogenic amines during food processing/storage.

Indexed as

HistaminePutrescineAnimalsBacteriaBiogenic AminesFish ProductsPeptidesProteomicsSeafoodVirulence FactorsBiogenic AminesHistaminePeptidesPutrescineVirulence Factorsbacteriabacterial detectionbiogenic aminefishLC–MS/MSshotgun quantitative proteomics

Identifiers

PMID38364257
PMCPMC10906483
OpenAlexW4391874579

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.