Evidence map›Paper›PMID 38362324›Full record

ArticleBiophysics and physicobiology2023

Biophysical characterization of microbial rhodopsins with DSE motif.

María Del Carmen Marín, Alexander L Jaffe, Patrick T West, Masae Konno, Jillian F Banfield, Keiichi Inoue

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biophysics and physicobiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

María Del Carmen MarínThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
Alexander L JaffeDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA.
Patrick T WestDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA.
Masae KonnoThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
Jillian F BanfieldInnovative Genomics Institute, University of California, Berkeley, CA 94720-2151, USA.
Keiichi InoueThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
Institute for Solid State Physics and Optics · HUJapan Science and Technology Agency · JPPlanetary Science Institute · USStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial rhodopsins are photoreceptive transmembrane proteins that transport ions or regulate other intracellular biological processes. Recent genomic and metagenomic analyses found many microbial rhodopsins with unique sequences distinct from known ones. Functional characterization of these new types of microbial rhodopsins is expected to expand our understanding of their physiological roles. Here, we found microbial rhodopsins having a DSE motif in the third transmembrane helix from members of the Actinobacteria. Although the expressed proteins exhibited blue-green light absorption, either no or extremely small outward H

Indexed as

flash photolysisH+ pumping activitymetagenomicsmicrobial rhodopsinsphotocycle

Identifiers

PMID38362324
PMCPMC10865882
OpenAlexW4323519790

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.