Evidence map›Paper›PMID 38360913›Full record

ArticleScientific reports2024

Evolutionary origin and distribution of amino acid mutations associated with resistance to sodium channel modulators in onion thrips, Thrips tabaci.

Akiya Jouraku, Yui Tomizawa, Kazuki Watanabe, Kiyoshi Yamada, Seigo Kuwazaki, Misato Aizawa, Satoshi Toda, Shoji Sonoda

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Akiya JourakuInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-8634, Japan.
Yui TomizawaSchool of Agriculture, Utsunomiya University, Utsunomiya, Tochigi, 321-8505, Japan.
Kazuki WatanabeSchool of Agriculture, Utsunomiya University, Utsunomiya, Tochigi, 321-8505, Japan.
Kiyoshi YamadaSchool of Agriculture, Utsunomiya University, Utsunomiya, Tochigi, 321-8505, Japan.
Seigo KuwazakiInstitute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-8634, Japan.
Misato AizawaSeisan Regional Agricultural Extension Center, Mitoyo, Kagawa, 769-1503, Japan.
Satoshi TodaInstitute for Plant Protection, National Agriculture and Food Research Organization, Higashihiroshima, Hiroshima, 739-2494, Japan.
Shoji SonodaSchool of Agriculture, Utsunomiya University, Utsunomiya, Tochigi, 321-8505, Japan. sonodas@cc.utsunomiya-u.ac.jp.
Utsunomiya University · JPNational Agriculture and Food Research Organization · JPInstitute of Agrobiological Sciences · JP

Funding

the Japan Society for the Promotion of Science (JSPS) 21H02192
6 · The paper itself

Abstract

In onion thrips Thrips tabaci, reduced sensitivity of the sodium channel caused by several sodium channel mutations have been correlated with pyrethroid resistance. For this study, using mitochondrial cytochrome c oxidase subunit I gene sequences, we examined the phylogenetic relation among a total of 52 thelytokous and arrhenotokous strains with different genotypes of the sodium channel mutations. Then, we used flow cytometry to estimate their ploidy. Results showed that the strains are divisible into three groups: diploid thelytoky, triploid thelytoky, and diploid arrhenotoky. Using 23 whole genome resequencing data obtained from 20 strains out of 52, we examined their genetic relation further using principal component analysis, admixture analysis, and a fixation index. Results showed that diploid and triploid thelytokous groups are further classifiable into two based on the sodium channel mutations harbored by the respective group members (strains). The greatest genetic divergence was observed between thelytokous and arrhenotokous groups with a pair of T929I and K1774N. Nevertheless, they shared a genomic region with virtually no polymorphism around the sodium channel gene loci, suggesting a hard selective sweep. Based on these findings, we discuss the evolutionary origin and distribution of the sodium channel mutations in T. tabaci.

Indexed as

ThysanopteraAmino AcidsAnimalsMutationOnionsPhylogenySodium ChannelsTriploidyAmino AcidsSodium Channels

Identifiers

PMID38360913
PMCPMC10869772
OpenAlexW4391846519

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.