Evidence map›Paper›PMID 38360844›Full record

ArticleScientific reports2024

Structure of recombinant formate dehydrogenase from Methylobacterium extorquens (MeFDH1).

Junsun Park, Yoonyoung Heo, Byoung Wook Jeon, Mingyu Jung, Yong Hwan Kim, Hyung Ho Lee, Soung-Hun Roh

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Junsun Park *Department of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, 08826, Republic of Korea.
Yoonyoung Heo *Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Byoung Wook Jeon *School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology, Ulsan, 44919, Republic of Korea.
Mingyu JungDepartment of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, 08826, Republic of Korea.
Yong Hwan KimSchool of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology, Ulsan, 44919, Republic of Korea. metalkim@unist.ac.kr.
Hyung Ho LeeDepartment of Chemistry, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea. hyungholee@snu.ac.kr.
Soung-Hun RohDepartment of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, 08826, Republic of Korea. shroh@snu.ac.kr.
Seoul National University · KRUlsan National Institute of Science and Technology · KR

Funding

national research fund korea 2015M3D3A1A01064919national research fund korea 2019M3E5D6063871national research fund korea 2022R1A5A6000760
6 · The paper itself

Abstract

Formate dehydrogenase (FDH) is critical for the conversion between formate and carbon dioxide. Despite its importance, the structural complexity of FDH and difficulties in the production of the enzyme have made elucidating its unique physicochemical properties challenging. Here, we purified recombinant Methylobacterium extorquens AM1 FDH (MeFDH1) and used cryo-electron microscopy to determine its structure. We resolved a heterodimeric MeFDH1 structure at a resolution of 2.8 Å, showing a noncanonical active site and a well-embedded Fe-S redox chain relay. In particular, the tungsten bis-molybdopterin guanine dinucleotide active site showed an open configuration with a flexible C-terminal cap domain, suggesting structural and dynamic heterogeneity in the enzyme.

Indexed as

Bacterial ProteinsFormate DehydrogenasesMethylobacterium extorquensCryoelectron MicroscopyBacterial ProteinsFormate DehydrogenasesCryo-EMFe-S redox chainFormate dehydrogenase

Identifiers

PMID38360844
PMCPMC10869683
OpenAlexW4391847274

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.