Evidence map›Paper›PMID 38360573›Full record

ArticleBMC genomic data2024

Whole genome sequence of Vibrio cholerae NB-183 isolated from freshwater in Ontario, Canada harbors a unique gene repertoire.

Opeyemi U Lawal, Noah Bryan, Mitra Soni, Yanhong Chen, Melinda Precious, Valeria R Parreira, Lawrence Goodridge

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Phylogenomics of novel clones ofMicrobiology spectrum · 2024
    Article
  2. Draft genome sequences of three poultryMicrobiology resource announcements · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Opeyemi U LawalCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada. lawal@uoguelph.ca.
Noah BryanCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada.
Mitra SoniCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada.
Yanhong ChenCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada.
Melinda PreciousCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada.
Valeria R ParreiraCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada.
Lawrence GoodridgeCanadian Research Institute for Food Safety (CRIFS), University of Guelph, Guelph, ON, N1G 2W1, Canada. goodridl@uoguelph.ca.
University of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveVibrio cholerae is an enteric pathogen that poses a significant threat to global health. It causes severe dehydrating diarrheal disease cholera in humans. V. cholerae could be acquired either from consuming contaminated seafood or direct contact with polluted waters. As part of a larger program that assesses the microbial community profile in aquatic systems, V. cholerae strain NB-183 was isolated and characterized using a combination of culture- and whole-genome sequencing-based approaches. DATA DESCRIPTION: Here we report the assembled and annotated whole-genome sequence of a V. cholerae strain NB-183 isolated from a recreational freshwater lake in Ontario, Canada. The genome was sequenced using short-read Illumina systems. The whole-genome sequencing yielded 4,112,549 bp genome size with 99 contigs with an average genome coverage of 96× and 47.42% G + C content. The whole genome-based comparison, phylogenomic and gene repertoire indicates that this strain harbors multiple virulence genes and biosynthetic gene clusters. This genome sequence and its associated datasets provided in this study will be an indispensable resource to enhance the understanding of the functional, ecological, and evolutionary dynamics of V. cholerae.

Indexed as

CholeraVibrio choleraeFresh WaterHumansOntarioVirulenceAntimicrobial resistanceAquatic systemsComparative genomicsGenomicsVibrio choleraeVirulence genesWater quality

Identifiers

PMID38360573
PMCPMC10870635
OpenAlexW4391836788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.