Evidence map›Paper›PMID 38359974›Full record

ArticleMethods in cell biology2024

Visualizing the dynamics of DNA replication and repair at the single-molecule level.

Scott Berger, Gheorghe Chistol

Open access · hybridAbstract read
In one paragraph

Article in Methods in cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Reconstitution of genome remodeling usingFrontiers in cell and developmental biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. DNA curtains to visualize chromatin interactions.Methods (San Diego, Calif.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Scott BergerBiophysics Program, Stanford School of Medicine, Stanford, CA, United States.
Gheorghe ChistolBiophysics Program, Stanford School of Medicine, Stanford, CA, United States; Chemical and Systems Biology Department, Cancer Biology Program, Stanford School of Medicine, Stanford, CA, United States. Electronic address: chistol@stanford.edu.
Stanford Medicine · US

Funding

Structure-Function Analysis of DNA Replication Initiation Factors Implicated in DiseaseR35GM147060 · NIGMS · STANFORD UNIVERSITY · PI Gheorghe Chistol · 2022 to 2026
$2.2M
NIGMS NIH HHS R35 GM147060
6 · The paper itself

Abstract

During cell division, the genome of each eukaryotic cell is copied by thousands of replisomes-large protein complexes consisting of several dozen proteins. Recent studies suggest that the eukaryotic replisome is much more dynamic than previously thought. To directly visualize replisome dynamics in a physiological context, we recently developed a single-molecule approach for imaging replication proteins in Xenopus egg extracts. These extracts contain all the soluble nuclear proteins and faithfully recapitulate DNA replication and repair in vitro, serving as a powerful platform for studying the mechanisms of genome maintenance. Here we present detailed protocols for conducting single-molecule experiments in nuclear egg extracts and preparing key reagents. This workflow can be easily adapted to visualize the dynamics and function of other proteins implicated in DNA replication and repair.

Indexed as

DNADNA ReplicationAnimalsCell Cycle ProteinsNuclear ProteinsXenopus laevisCell Cycle ProteinsDNANuclear ProteinsAntibodyCdc45CIDERCMGData analysisDNA-protein crosslinksDNA repairDNA replicationFluorescent labelingGINSHigh throughput imagingImmuno-depletionKEHRMITLambda DNAMcm2-7Microfluidic flow cellPEGPhADEReplisomeSingle molecule imagingTIRF microscopyXenopus egg extract

Identifiers

PMID38359974
PMCPMC11246157
OpenAlexW4385734082

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.