Evidence map›Paper›PMID 38358265›Full record

ArticleProtein science : a publication of the Protein Society2024

The catalytic domain of free or ligand bound histone deacetylase 4 occurs in solution predominantly in closed conformation.

Markus Schweipert, Thomas Nehls, Anton Frühauf, Cecilé Debarnot, Adarsh Kumar, Stefan Knapp, Frederik Lermyte, Franz-Josef Meyer-Almes

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Markus SchweipertDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences, Darmstadt, Germany.
Thomas NehlsDepartment of Chemistry, Clemens-Schöpf-Institute of Chemistry and Biochemistry, Technical University of Darmstadt, Darmstadt, Germany.
Anton FrühaufDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences, Darmstadt, Germany.
Cecilé DebarnotDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences, Darmstadt, Germany.
Adarsh KumarFachbereich Biochemie, Chemie und Pharmazie, Institut für Pharmazeutische Chemie, Goethe-University Frankfurt, Frankfurt Am Main, Germany.
Stefan KnappFachbereich Biochemie, Chemie und Pharmazie, Institut für Pharmazeutische Chemie, Goethe-University Frankfurt, Frankfurt Am Main, Germany.
Frederik LermyteDepartment of Chemistry, Clemens-Schöpf-Institute of Chemistry and Biochemistry, Technical University of Darmstadt, Darmstadt, Germany.
Franz-Josef Meyer-AlmesDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences, Darmstadt, Germany.ORCID 0000-0002-1001-3249
Technische Universität Darmstadt · DEGoethe University Frankfurt · DE

Funding

Deutsche ForschungsgemeinschaftState of Hesse
6 · The paper itself

Abstract

Human histone deacetylase 4 (HDAC4) is a key epigenetic regulator involved in a number of important cellular processes. This makes HDAC4 a promising target for the treatment of several cancers and neurodegenerative diseases, in particular Huntington's disease. HDAC4 is highly regulated by phosphorylation and oxidation, which determine its nuclear or cytosolic localization, and exerts its function through multiple interactions with other proteins, forming multiprotein complexes of varying composition. The catalytic domain of HDAC4 is known to interact with the SMRT/NCOR corepressor complex when the structural zinc-binding domain (sZBD) is intact and forms a closed conformation. Crystal structures of the HDAC4 catalytic domain have been reported showing an open conformation of HDAC4 when bound to certain ligands. Here, we investigated the relevance of this HDAC4 conformation under physiological conditions in solution. We show that proper zinc chelation in the sZBD is essential for enzyme function. Loss of the structural zinc ion not only leads to a massive decrease in enzyme activity, but it also has serious consequences for the overall structural integrity and stability of the protein. However, the Zn

Indexed as

Histone DeacetylasesZincCatalytic DomainHumansLigandsPhosphorylationHistone DeacetylasesLigandsZincallosteric regulationconformationalconformational equilibriumconformationsconformation sensitive mass spectrometryHDAC4ligand bindingNMRtransient binding pockets

Identifiers

PMID38358265
PMCPMC10868454
OpenAlexW4391843658

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.