Evidence map›Paper›PMID 38357671›Full record

ArticleiScience2024

Sex-dependent placental methylation quantitative trait loci provide insight into the prenatal origins of childhood onset traits and conditions.

William Casazza, Amy M Inkster, Giulia F Del Gobbo, Victor Yuan, Fabien Delahaye, Carmen Marsit, Yongjin P Park, Wendy P Robinson, Sara Mostafavi, Jessica K Dennis

Open access · goldAbstract read
In one paragraph

Article in iScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

William CasazzaCentre for Molecular Medicine and Therapeutics, BC Children's Hospital, Vancouver, BC, Canada.
Amy M InksterBC Children's Hospital Research Institute, Vancouver, BC, Canada.
Giulia F Del GobboBC Children's Hospital Research Institute, Vancouver, BC, Canada.
Victor YuanBC Children's Hospital Research Institute, Vancouver, BC, Canada.
Fabien DelahayeAlbert Einstein College of Medicine, The Bronx, NY, USA.
Carmen MarsitRollins School of Public Health, Emory University, Atlanta, GA, USA.
Yongjin P ParkDepartment of Statistics, University of British Columbia, Vancouver, BC, Canada.
Wendy P RobinsonBC Children's Hospital Research Institute, Vancouver, BC, Canada.
Sara MostafaviCentre for Molecular Medicine and Therapeutics, BC Children's Hospital, Vancouver, BC, Canada.
Jessica K DennisCentre for Molecular Medicine and Therapeutics, BC Children's Hospital, Vancouver, BC, Canada.
University of British Columbia · CAAlbert Einstein College of Medicine · USEmory University · USUniversity of Washington · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CANDACE S JOHNSON · 1985 to 2026
$116.6M
Pilot Project ProgramP30ES019776 · NIEHS · EMORY UNIVERSITY · PI William Michael Caudle · 2013 to 2026
$22.6M
Project 3: Placental Biomarkers of Exposure and Outcome (Marsit)P01ES022832 · NIEHS · DARTMOUTH COLLEGE · PI KARAGAS, MARGARET RITA · 2013 to 2018
$4.7M
Environment, Imprinting, and NeurodevelopmentR01ES022223 · NIEHS · EMORY UNIVERSITY · PI CHEN, JIA, MARSIT, CARMEN JOSEPH · 2013 to 2017
$4.3M
Characterizing the functional genomic atlas of human placenta and unveiling the prenatal programming of early-life developmentR01HD108310 · NICHD · EMORY UNIVERSITY · PI Jia Chen, Carmen Joseph Marsit · 2023 to 2026
$2.8M
Epigenetics in Neurodevelopment and Mental HealthR01MH094609 · NIMH · DARTMOUTH COLLEGE · PI MARSIT, CARMEN JOSEPH · 2011 to 2015
$2.3M
Enriching the Rhode Island Child Health StudyR24ES028507 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit, LAURA R STROUD · 2017 to 2026
$2.3M
MicroRNA, Environmental Exposures and Newborn OutcomesR01ES025145 · NIEHS · EMORY UNIVERSITY · PI KOESTLER, DEVIN CHARLES, MARSIT, CARMEN JOSEPH · 2016 to 2019
$1.8M
Enriching the Rhode Island Child Health StudyU24ES028507 · NIEHS · EMORY UNIVERSITY · PI MARSIT, CARMEN JOSEPH, STROUD, LAURA R · 2023 to 2025
$1.0M
Environmental influences and function of cytosine modification in human placentaR21ES028226 · NIEHS · EMORY UNIVERSITY · PI MARSIT, CARMEN JOSEPH · 2017 to 2018
$429k
Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_PC_19009NCI NIH HHS P30 CA016056NICHD NIH HHS HHSN275200800003CNICHD NIH HHS HHSN275200800003INICHD NIH HHS HHSN275200800012CNICHD NIH HHS HHSN275200800013CNICHD NIH HHS HHSN275200800014CNICHD NIH HHS HHSN275200800028CNICHD NIH HHS HHSN275201000009CNICHD NIH HHS R01 HD108310NIEHS NIH HHS P01 ES022832NIEHS NIH HHS P30 ES019776NIEHS NIH HHS R01 ES022223NIEHS NIH HHS R01 ES025145NIEHS NIH HHS R21 ES028226NIEHS NIH HHS R24 ES028507NIEHS NIH HHS U24 ES028507NIMH NIH HHS R01 MH094609
6 · The paper itself

Abstract

Molecular quantitative trait loci (QTLs) allow us to understand the biology captured in genome-wide association studies (GWASs). The placenta regulates fetal development and shows sex differences in DNA methylation. We therefore hypothesized that placental methylation QTL (mQTL) explain variation in genetic risk for childhood onset traits, and that effects differ by sex. We analyzed 411 term placentas from two studies and found 49,252 methylation (CpG) sites with mQTL and 2,489 CpG sites with sex-dependent mQTL. All mQTL were enriched in regions that typically affect gene expression in prenatal tissues. All mQTL were also enriched in GWAS results for growth- and immune-related traits, but male- and female-specific mQTL were more enriched than cross-sex mQTL. mQTL colocalized with trait loci at 777 CpG sites, with 216 (28%) specific to males or females. Overall, mQTL specific to male and female placenta capture otherwise overlooked variation in childhood traits.

Indexed as

Association analysisDevelopmental geneticsHuman GeneticsQuantitative genetics

Identifiers

PMID38357671
PMCPMC10865402
OpenAlexW4391247439

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.