Evidence map›Paper›PMID 38357349›Full record

ArticleFrontiers in microbiology2024

CyanoCyc cyanobacterial web portal.

Lisa R Moore, Ron Caspi, Douglas A Campbell, John R Casey, Sophie Crevecoeur, David J Lea-Smith, Bin Long, Naaman M Omar, Suzanne M Paley, Nicolas M Schmelling and 3 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. From pond to platform: howJournal of bacteriology · 2026
    Review
  4. Genomes of NBMC genomics · 2026
    Article
  5. Rhamnose biosynthesis is not impaired by the deletion of putativeApplied and environmental microbiology · 2025
    Article
  6. Review
  7. Article
  8. Machine learning reveals the transcriptional regulatory network and circadian dynamics ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lisa R MooreSRI International, Menlo Park, CA, United States.
Ron CaspiSRI International, Menlo Park, CA, United States.
Douglas A CampbellMount Allison University, Sackville, NB, Canada.
John R CaseyLawrence Livermore National Laboratory, Physical and Life Sciences Directorate, Livermore, CA, United States.
Sophie CrevecoeurWatershed Hydrology and Ecology Research Division, Environment and Climate Change Canada, Burlington, ON, Canada.
David J Lea-SmithSchool of Biological Sciences, University of East Anglia, Norwich, United Kingdom.
Bin LongDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, United States.
Naaman M OmarMount Allison University, Sackville, NB, Canada.
Suzanne M PaleySRI International, Menlo Park, CA, United States.
Nicolas M SchmellingKrauts and Sprouts, Duesseldorf, Germany.
Alejandro TorradoInstitute of Plant Biochemistry and Photosynthesis, University of Seville and Spanish National Research Council, Sevilla, Spain.
Jonathan P ZehrOcean Sciences Department, University of California, Santa Cruz, Santa Cruz, CA, United States.
Peter D KarpSRI International, Menlo Park, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools. It was developed to address the needs of the cyanobacterial research and biotechnology communities. The 277 annotated cyanobacterial genomes currently in CyanoCyc are supplemented with computational inferences including predicted metabolic pathways, operons, protein complexes, and orthologs; and with data imported from external databases, such as protein features and Gene Ontology (GO) terms imported from UniProt. Five of the genome databases have undergone manual curation with input from more than a dozen cyanobacteria experts to correct errors and integrate information from more than 1,765 published articles. CyanoCyc has bioinformatics tools that encompass genome, metabolic pathway and regulatory informatics; omics data analysis; and comparative analyses, including visualizations of multiple genomes aligned at orthologous genes, and comparisons of metabolic networks for multiple organisms. CyanoCyc is a high-quality, reliable knowledgebase that accelerates scientists' work by enabling users to quickly find accurate information using its powerful set of search tools, to understand gene function through expert mini-reviews with citations, to acquire information quickly using its interactive visualization tools, and to inform better decision-making for fundamental and applied research.

Indexed as

bioinformaticsbiotechnologycurationcyanobacteriaCyanoCycdatabasegenomesmetabolism

Identifiers

PMID38357349
PMCPMC10864581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.