Evidence map›Paper›PMID 38356009›Full record

ArticleBiochemical genetics2024

Global DNA Methylation Levels Viz-a-Viz Genetic and Biochemical Variations in One Carbon Metabolic Pathway: An Exploratory Study from North India.

Vineet Chaudhary, Debashis Bhattacharjee, Naorem Kiranmala Devi, Kallur Nava Saraswathy

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Article in Biochemical genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Vineet ChaudharyDepartment of Anthropology, University of Delhi, Delhi, 110007, India.
Debashis BhattacharjeeDepartment of Anthropology, University of Delhi, Delhi, 110007, India.
Naorem Kiranmala DeviDepartment of Anthropology, University of Delhi, Delhi, 110007, India.
Kallur Nava SaraswathyDepartment of Anthropology, University of Delhi, Delhi, 110007, India. knsaraswathy@yahoo.com.ORCID http://orcid.org/0000-0002-0826-9675
University of Delhi · IN

Funding

Department of Science and Technology, Ministry of Science and Technology, India DST/CSRI/2018/162University of Delhi IoE/FRP/PCMS/2020
6 · The paper itself

Abstract

Despite the importance of one carbon metabolic pathway (OCMP) in modulating the DNA methylation process, only a few population-based studies have explored their relationship among healthy individuals. This study aimed to understand the variations in global DNA methylation levels with respect to selected genetic (CBS 844ins68, MTRR A66G, MTR A2756G, and MTHFR C677T polymorphisms) and biochemical (folate, vitamin B12, and homocysteine) markers associated with OCMP among healthy North Indian adults. The study has been conducted among 1095 individuals of either sex (69.5% females), aged 30-75 years. A sample of 5 mL of blood was collected from each participant. Homocysteine, folate, and vitamin B12 levels were determined using the chemiluminescence technique. Restriction digestion was performed for genotyping MTRR A66G, MTR A2756G, and MTHFR C677T polymorphisms and allele-specific PCR amplification for CBS 844ins68 polymorphism. Global DNA methylation levels were analyzed using ELISA-based colorimetric technique. Of the selected genetic and biochemical markers, the mutant MTRR A66G allele was positively associated with global DNA methylation levels. Further, advanced age was inversely associated with methylation levels. MTRR 66GG genotype group was hypermethylated than other genotypes in folate replete and vitamin B12 deficient group (a condition prevalent among vegetarians), suggesting that the G allele may be more efficient than the wild-type allele in such conditions. Global DNA methylation levels appeared to be more influenced by genetic than biochemical factors. MTRR 66G allele may have a selective advantage in vitamin B12 deficient conditions. Further research should be undertaken to understand how genetics affects epigenetic processes.

Indexed as

5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseDNA MethylationFerredoxin-NADP ReductaseFolic AcidMethylenetetrahydrofolate Reductase (NADPH2)Vitamin B 12AdultAgedCarbonCystathionine beta-SynthaseFemaleHomocysteineHumansIndiaMaleMetabolic Networks and Pathways5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseCarbonCystathionine beta-SynthaseFerredoxin-NADP ReductaseFolic AcidHomocysteinemethionine synthase reductaseMethylenetetrahydrofolate Reductase (NADPH2)MTHFR protein, humanMTR protein, humanVitamin B 12AgingCBS 844ins68DNA methylationMTHFR C677TMTR A2756GMTRR A66G

Identifiers

PMID38356009
OpenAlexW4391823894

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.