Evidence map›Paper›PMID 38355784›Full record

ArticleMolecular psychiatry2024

New rabies viral resources for multi-scale neural circuit mapping.

Alexis Bouin, Ginny Wu, Orkide O Koyuncu, Qiao Ye, Keun-Young Kim, Michele Y Wu, Liqi Tong, Lujia Chen, Sebastien Phan, Mason R Mackey and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 14 citations in OpenAlex.

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  8. Inhibitory Neurons Marked by the Connectivity Molecule Kirrel3 Regulate Memory Precision.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Alexis Bouin *Department of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Ginny Wu *Department Anatomy & Neurobiology, School of Medicine, University of California, Irvine, CA, 92697, USA.ORCID 0009-0004-3544-3992
Orkide O KoyuncuDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Qiao YeDepartment Anatomy & Neurobiology, School of Medicine, University of California, Irvine, CA, 92697, USA.ORCID 0000-0003-1456-2867
Keun-Young KimThe National Center for Microscopy and Imaging Research (NCMIR) and the Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Michele Y WuDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Liqi TongDepartment Anatomy & Neurobiology, School of Medicine, University of California, Irvine, CA, 92697, USA.
Lujia ChenDepartment Anatomy & Neurobiology, School of Medicine, University of California, Irvine, CA, 92697, USA.
Sebastien PhanThe National Center for Microscopy and Imaging Research (NCMIR) and the Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Mason R MackeyThe National Center for Microscopy and Imaging Research (NCMIR) and the Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Ranjan RamachandraThe National Center for Microscopy and Imaging Research (NCMIR) and the Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Mark H EllismanThe National Center for Microscopy and Imaging Research (NCMIR) and the Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Todd C HolmesPhysiology & Biophysics, School of Medicine, University of California, Irvine, CA, 92697, USA.ORCID 0000-0001-8152-8832
Bert L SemlerDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA, 92697, USA. blsemler@uci.edu.
Xiangmin XuDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA, 92697, USA. xiangmix@uci.edu.ORCID 0000-0002-5828-1533
University of California, Irvine · USUniversity of California San Diego · US

Funding

National Center for Microscopy and Imaging Research: A BRAIN Technology Integration and Dissemination ResourceU24NS120055 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2021 to 2025
$5.4M
UV to blue neuronal phototransduction mechanismsR35GM127102 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Todd C Holmes · 2018 to 2026
$4.4M
Genetically engineered anterograde monosynaptic viral tracers for multi-species neural circuit analysisRF1MH120020 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI HORWITZ, GREGORY D, SANDRI-GOLDIN, ROZANNE M · 2019 to 2019
$4.3M
Support of and Extensions to the Cell Image LibraryR01GM082949 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2007 to 2019
$4.1M
The National Center for Microscopy and Imaging Research, a Community-wide Scientific ResourceR24GM137200 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2020 to 2022
$3.0M
FEI TITAN HALO 300kV INTERMEDIATE VOLTAGE ELECTRON MICROSCOPES10OD021784 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2017 to 2017
$1.9M
Engineered AAV vectors for combinatorial treatment of rare genetic brain diseasesR01FD007478 · FDA · UNIVERSITY OF CALIFORNIA-IRVINE · PI KIMONIS, VIRGINIA EUNICE, LA SPADA, ALBERT R · 2021 to 2023
$1.8M
CRCNS: Deciphering the Dynamical Multi-Scale Structure-Function Relation of Dendritic SpinesR01DA038896 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2014 to 2018
$887k
Establishing a Laboratory Model of Herpes simplex virus (HSV) Latency Using Compartmented Neuron CulturesR21AI144492 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI KOYUNCU, ORKIDE O. · 2020 to 2021
$438k
Customized cleared tissue light-sheet fluorescence microscope for imaging large brain samplesS10MH124715 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI XU, XIANGMIN · 2021 to 2021
$436k
FDA HHS R01 FD007478NIAID NIH HHS R21 AI144492NIDA NIH HHS R01 DA038896NIGMS NIH HHS R01 GM082949NIGMS NIH HHS R24 GM137200NIGMS NIH HHS R35 GM127102NIH HHS S10 OD021784NIMH NIH HHS RF1 MH120020NIMH NIH HHS S10 MH124715NINDS NIH HHS U24 NS120055NSF | BIO | Division of Biological Infrastructure (DBI) NSF2014862-UTA20-000890U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21AI144492U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 5R01GM082949U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 5R35GM127102U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R24GM137200U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) RF1MH120020U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) 1U24NS120055U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) 1S10OD021784U.S. Department of Health & Human Services | U.S. Food and Drug Administration (U.S. Food & Drug Administration) R01FD007478
6 · The paper itself

Abstract

Comparisons and linkage between multiple imaging scales are essential for neural circuit connectomics. Here, we report 20 new recombinant rabies virus (RV) vectors that we have developed for multi-scale and multi-modal neural circuit mapping tools. Our new RV tools for mesoscale imaging express a range of improved fluorescent proteins. Further refinements target specific neuronal subcellular locations of interest. We demonstrate the discovery power of these new tools including the detection of detailed microstructural changes of rabies-labeled neurons in aging and Alzheimer's disease mouse models, live imaging of neuronal activities using calcium indicators, and automated measurement of infected neurons. RVs that encode GFP and ferritin as electron microscopy (EM) and fluorescence microscopy reporters are used for dual EM and mesoscale imaging. These new viral variants significantly expand the scale and power of rabies virus-mediated neural labeling and circuit mapping across multiple imaging scales in health and disease.

Indexed as

NeuronsRabies virusAlzheimer DiseaseAnimalsBrainBrain MappingConnectomeDisease Models, AnimalGenetic VectorsGreen Fluorescent ProteinsHumansMiceMice, Inbred C57BLMicroscopy, FluorescenceNerve NetRabiesGreen Fluorescent Proteins

Identifiers

PMID38355784
PMCPMC11322437
OpenAlexW4391813606

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.