Evidence map›Paper›PMID 38355722›Full record

ArticleNature chemical biology2024

An intramolecular macrocyclase in plant ribosomal peptide biosynthesis.

Lisa S Mydy, Jordan Hungerford, Desnor N Chigumba, Jamie R Konwerski, Sarah C Jantzi, Di Wang, Janet L Smith, Roland D Kersten

Abstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Emerging classes of copper enzymes.Current opinion in chemical biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Peptide Hormone-Mediated Regulation of Plant Development and Environmental Adaptability.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. The emergence and loss of cyclic peptides inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lisa S MydyDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA. lmydy@umich.edu.ORCID http://orcid.org/0000-0002-6976-4426
Jordan HungerfordDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Desnor N ChigumbaDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Jamie R KonwerskiLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
Sarah C JantziPlasma Chemistry Laboratory, Center for Applied Isotope Studies, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0002-9420-0999
Di WangDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-5898-7878
Janet L SmithLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-0664-9228
Roland D KerstenDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA. rkersten@umich.edu.ORCID http://orcid.org/0000-0001-5811-7330

Funding

User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI · 2020 to 2026
$34.3M
STRUCTURE AND FUNCTION OF A PURINE BIOSYNTHETIC ENZYMER01DK042303 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SMITH, JANET L. · 1990 to 2024
$6.6M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Discovery, Biosynthesis and Engineering of Side-Chain-Macrocyclic Plant PeptidesR35GM146934 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Roland David Kersten · 2022 to 2026
$1.8M
Mechanistic Investigation of Copper-Dependent Peptide Cyclases for Macrocycle EngineeringF32GM146395 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYDY, LISA SUSANNAH · 2022 to 2023
$152k
NIDDK NIH HHS R01 DK042303NIGMS NIH HHS F32 GM146395NIGMS NIH HHS P30 GM138396NIGMS NIH HHS R35 GM146934NIH HHS S10 OD012289
6 · The paper itself

Abstract

The biosynthetic dogma of ribosomally synthesized and posttranslationally modified peptides (RiPP) involves enzymatic intermolecular modification of core peptide motifs in precursor peptides. The plant-specific BURP-domain protein family, named after their four founding members, includes autocatalytic peptide cyclases involved in the biosynthesis of side-chain-macrocyclic plant RiPPs. Here we show that AhyBURP, a representative of the founding Unknown Seed Protein-type BURP-domain subfamily, catalyzes intramolecular macrocyclizations of its core peptide during the sequential biosynthesis of monocyclic lyciumin I via glycine-tryptophan crosslinking and bicyclic legumenin via glutamine-tyrosine crosslinking. X-ray crystallography of AhyBURP reveals the BURP-domain fold with two type II copper centers derived from a conserved stapled-disulfide and His motif. We show the macrocyclization of lyciumin-C(sp

Indexed as

LignansProtein BiosynthesisProtein Processing, Post-TranslationalAmino Acid SequencePeptidesPlant ProteinsPlantsLignanslyciuminPeptidesPlant Proteins

Identifiers

PMID38355722
PMCPMC11049724

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.