Evidence map›Paper›PMID 38355721›Full record

ArticleNature chemical biology2024

Carotenoid cleavage enzymes evolved convergently to generate the visual chromophore.

Yasmeen J Solano, Michael P Everett, Kelly S Dang, Jude Abueg, Philip D Kiser

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. The science of minerality.RSC advances · 2025
    Review
  6. Article
  7. Article
  8. Vitamin A supply in the eye and establishment of the visual cycle.Current topics in developmental biology · 2025
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yasmeen J SolanoDepartment of Physiology and Biophysics, University of California Irvine School of Medicine, Irvine, CA, USA.
Michael P EverettDepartment of Physiology and Biophysics, University of California Irvine School of Medicine, Irvine, CA, USA.
Kelly S DangDepartment of Physiology and Biophysics, University of California Irvine School of Medicine, Irvine, CA, USA.
Jude AbuegDepartment of Physiology and Biophysics, University of California Irvine School of Medicine, Irvine, CA, USA.
Philip D KiserDepartment of Physiology and Biophysics, University of California Irvine School of Medicine, Irvine, CA, USA. pkiser@uci.edu.ORCID 0000-0003-1184-9539
University of California, Irvine · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NEI UCI Center Core Grant for Vision ResearchP30EY034070 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI James V Jester · 2022 to 2026
$3.7M
Chemical Biology of the Visual PigmentsR01EY034519 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Philip David Kiser, Krzysztof Palczewski · 2023 to 2026
$2.0M
Retinoid cycles and retinal disease treatmentI01BX004939 · VA · VETERANS HEALTH ADMINISTRATION · PI KISER, PHILIP DAVID · 2020 to 2025
–
BLRD VA I01 BX004939National Science Foundation (NSF) CHE-2107713NEI NIH HHS P30 EY034070NEI NIH HHS R01 EY034519NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P41 GM103393U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY034519U.S. Department of Veterans Affairs (Department of Veterans Affairs) BX004939
6 · The paper itself

Abstract

The retinal light response in animals originates from the photoisomerization of an opsin-coupled 11-cis-retinaldehyde chromophore. This visual chromophore is enzymatically produced through the action of carotenoid cleavage dioxygenases. Vertebrates require two carotenoid cleavage dioxygenases, β-carotene oxygenase 1 and retinal pigment epithelium 65 (RPE65), to form 11-cis-retinaldehyde from carotenoid substrates, whereas invertebrates such as insects use a single enzyme known as Neither Inactivation Nor Afterpotential B (NinaB). RPE65 and NinaB couple trans-cis isomerization with hydrolysis and oxygenation, respectively, but the mechanistic relationship of their isomerase activities remains unknown. Here we report the structure of NinaB, revealing details of its active site architecture and mode of membrane binding. Structure-guided mutagenesis studies identify a residue cluster deep within the NinaB substrate-binding cleft that controls its isomerization activity. Our data demonstrate that isomerization activity is mediated by distinct active site regions in NinaB and RPE65-an evolutionary convergence that deepens our understanding of visual system diversity.

Indexed as

CarotenoidsAnimalsCatalytic Domaincis-trans-IsomerasesDioxygenasesEvolution, MolecularHumansModels, MolecularRetinaldehydeRetinoid IsomerohydrolaseCarotenoidscis-trans-IsomerasesDioxygenasesRetinaldehydeRetinoid Isomerohydrolase

Identifiers

PMID38355721
PMCPMC11142922
OpenAlexW4391821941

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.