Evidence map›Paper›PMID 38355595›Full record

ArticleBiomarker research2024

DeepMPTB: a vaginal microbiome-based deep neural network as artificial intelligence strategy for efficient preterm birth prediction.

Oshma Chakoory, Vincent Barra, Emmanuelle Rochette, Loïc Blanchon, Vincent Sapin, Etienne Merlin, Maguelonne Pons, Denis Gallot, Sophie Comtet-Marre, Pierre Peyret

Abstract readLetter
In one paragraph

Article in Biomarker research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  3. [Research progress in artificial intelligence for the diagnosis and management of diseases in preterm infants].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2026
    Review
  4. Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Oshma ChakooryUniversité Clermont Auvergne, INRAE, MEDIS, F-63000, Clermont-Ferrand, France.
Vincent BarraUniversité Clermont Auvergne, CNRS, Mines de Saint-Étienne, Clermont-Auvergne-INP, LIMOS, Clermont-Ferrand, France.
Emmanuelle RochetteDepartment of Pediatrics, CRECHE Unit, CHU Clermont-Ferrand, Inserm CIC 1405, F-63000, Clermont-Ferrand, France.
Loïc BlanchonTeam "Translational approach to epithelial injury and repair", Université Clermont Auvergne, CNRS, Inserm, iGReD, F-63000, Clermont-Ferrand, France.
Vincent SapinTeam "Translational approach to epithelial injury and repair", Université Clermont Auvergne, CNRS, Inserm, iGReD, F-63000, Clermont-Ferrand, France.
Etienne MerlinDepartment of Pediatrics, CRECHE Unit, CHU Clermont-Ferrand, Inserm CIC 1405, F-63000, Clermont-Ferrand, France.
Maguelonne PonsDepartment of Pediatrics, CRECHE Unit, CHU Clermont-Ferrand, Inserm CIC 1405, F-63000, Clermont-Ferrand, France.
Denis GallotTeam "Translational approach to epithelial injury and repair", Université Clermont Auvergne, CNRS, Inserm, iGReD, F-63000, Clermont-Ferrand, France.
Sophie Comtet-MarreUniversité Clermont Auvergne, INRAE, MEDIS, F-63000, Clermont-Ferrand, France. sophie.marre@uca.fr.
Pierre PeyretUniversité Clermont Auvergne, INRAE, MEDIS, F-63000, Clermont-Ferrand, France. pierre.peyret@uca.fr.

Funding

ANR MIA: Artificial Intelligence for clerMontFEDER Intelligence Artificielle
6 · The paper itself

Abstract

In recent decades, preterm birth (PTB) has become a significant research focus in the healthcare field, as it is a leading cause of neonatal mortality worldwide. Using five independent study cohorts including 1290 vaginal samples from 561 pregnant women who delivered at term (n = 1029) or prematurely (n = 261), we analysed vaginal metagenomics data for precise microbiome structure characterization. Then, a deep neural network (DNN) was trained to predict term birth (TB) and PTB with an accuracy of 84.10% and an area under the receiver operating characteristic curve (AUROC) of 0.875 ± 0.11. During a benchmarking process, we demonstrated that our DL model outperformed seven currently used machine learning algorithms. Finally, our results indicate that overall diversity of the vaginal microbiota should be taken in account to predict PTB and not specific species. This artificial-intelligence based strategy should be highly helpful for clinicians in predicting preterm birth risk, allowing personalized assistance to address various health issues. DeepMPTB is open source and free for academic use. It is licensed under a GNU Affero General Public License 3.0 and is available at https://deepmptb.streamlit.app/ . Source code is available at https://github.com/oschakoory/DeepMPTB and can be easily installed using Docker ( https://www.docker.com/ ).

Indexed as

Artificial intelligenceClinical dataDeep neural networkMachine learningMicrobial signatureModel explainability.Phenotype predictionPredictive diagnosisPregnancyPreterm birthVaginal microbiome

Identifiers

PMID38355595
PMCPMC10865581

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.