Evidence map›Paper›PMID 38355287›Full record

ArticleLife science alliance2024

Variety in the USP deubiquitinase catalytic mechanism.

Niels Keijzer, Anu Priyanka, Yvette Stijf-Bultsma, Alexander Fish, Malte Gersch, Titia K Sixma

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 26 citations in OpenAlex.

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  12. AKT and DUBs: a bidirectional relationship.Cellular & molecular biology letters · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Niels KeijzerDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, Netherlands.
Anu PriyankaDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, Netherlands.ORCID 0000-0002-0098-9790
Yvette Stijf-BultsmaDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, Netherlands.
Alexander FishDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, Netherlands.
Malte GerschMax Planck Institute of Molecular Physiology, Chemical Genomics Centre, Dortmund, Germany.ORCID 0000-0003-2767-9589
Titia K SixmaDivision of Biochemistry and Oncode Institute, Netherlands Cancer Institute, Amsterdam, Netherlands t.sixma@nki.nl.ORCID 0000-0001-6180-0632
The Netherlands Cancer Institute · NLTU Dortmund University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ubiquitin-specific protease (USP) family of deubiquitinases (DUBs) controls cellular ubiquitin-dependent signaling events. This generates therapeutic potential, with active-site inhibitors in preclinical and clinical studies. Understanding of the USP active site is primarily guided by USP7 data, where the catalytic triad consists of cysteine, histidine, and a third residue (third critical residue), which polarizes the histidine through a hydrogen bond. A conserved aspartate (fourth critical residue) is directly adjacent to this third critical residue. Although both critical residues accommodate catalysis in USP2, these residues have not been comprehensively investigated in other USPs. Here, we quantitatively investigate their roles in five USPs. Although USP7 relies on the third critical residue for catalysis, this residue is dispensable in USP1, USP15, USP40, and USP48, where the fourth critical residue is vital instead. Furthermore, these residues vary in importance for nucleophilic attack. The diverging catalytic mechanisms of USP1 and USP7 are independent of substrate and retained in cells for USP1. This unexpected variety of catalytic mechanisms in this well-conserved protein family may generate opportunities for selective targeting of individual USPs.

Indexed as

HistidineUbiquitin-Specific ProteasesCatalysisUbiquitin-Specific Peptidase 7HistidineUbiquitin-Specific Peptidase 7Ubiquitin-Specific Proteases

Identifiers

PMID38355287
PMCPMC10867860
OpenAlexW4391823983

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.