Evidence map›Paper›PMID 38354247›Full record

ArticleScience advances2024

Cryo-EM of soft-landed β-galactosidase: Gas-phase and native structures are remarkably similar.

Tim K Esser, Jan Böhning, Alpcan Önür, Dinesh K Chinthapalli, Lukas Eriksson, Marko Grabarics, Paul Fremdling, Albert Konijnenberg, Alexander Makarov, Aurelien Botman and 7 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Tim K EsserDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0002-1174-4131
Jan BöhningStructural Studies Division, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.ORCID 0000-0002-6242-1041
Alpcan ÖnürDepartment of Chemistry, University of Konstanz, Konstanz 78457, Germany.ORCID 0009-0009-7528-3870
Dinesh K ChinthapalliDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0002-6193-1277
Lukas ErikssonDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0009-0000-1149-6118
Marko GrabaricsDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0002-2550-637X
Paul FremdlingDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0002-1052-3783
Albert KonijnenbergThermo Fisher Scientific, De Schakel 2, 5651GH Eindhoven, Netherlands.
Alexander MakarovThermo Fisher Scientific, Bremen 28199, Germany.ORCID 0000-0002-7046-6709
Aurelien BotmanThermo Fisher Scientific, 5350 NE Dawson Creek Drive, Hillsboro, OR 97124, USA.ORCID 0000-0002-6603-5295
Christine PeterDepartment of Chemistry, University of Konstanz, Konstanz 78457, Germany.ORCID 0000-0002-1471-5440
Justin L P BeneschDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0002-1507-3742
Carol V RobinsonDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0001-7829-5505
Joseph GaultDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0001-7686-2983
Lindsay BakerKavli Institute for NanoScience Discovery, Dorothy Crowfoot Hodgkin Building, Oxford OX1 3QU, UK.ORCID 0000-0001-9578-4263
Tanmay A M BharatStructural Studies Division, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.ORCID 0000-0002-0168-0277
Stephan RauschenbachDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.ORCID 0000-0001-9382-1948

Funding

Wellcome Trust
6 · The paper itself

Abstract

Native mass spectrometry (MS) has become widely accepted in structural biology, providing information on stoichiometry, interactions, homogeneity, and shape of protein complexes. Yet, the fundamental assumption that proteins inside the mass spectrometer retain a structure faithful to native proteins in solution remains a matter of intense debate. Here, we reveal the gas-phase structure of β-galactosidase using single-particle cryo-electron microscopy (cryo-EM) down to 2.6-Å resolution, enabled by soft landing of mass-selected protein complexes onto cold transmission electron microscopy (TEM) grids followed by in situ ice coating. We find that large parts of the secondary and tertiary structure are retained from the solution. Dehydration-driven subunit reorientation leads to consistent compaction in the gas phase. By providing a direct link between high-resolution imaging and the capability to handle and select protein complexes that behave problematically in conventional sample preparation, the approach has the potential to expand the scope of both native mass spectrometry and cryo-EM.

Indexed as

ProteinsSpecimen Handlingbeta-GalactosidaseCryoelectron MicroscopyMass Spectrometrybeta-GalactosidaseProteins

Identifiers

PMID38354247
PMCPMC10866560

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.