Evidence map›Paper›PMID 38351722›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2024

CdsA, a CDP-diacylglycerol synthase involved in phospholipid and glycolipid MPIase biosynthesis, possesses multiple initiation codons.

Runa Hikage, Yusei Sekiya, Katsuhiro Sawasato, Ken-Ichi Nishiyama

Open access · hybridAbstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Key contributions of a glycolipid to membrane protein integration.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Runa HikageDepartment of Applied Biological Chemistry, Faculty of Agriculture, Iwate University, Morioka, Japan.
Yusei SekiyaDepartment of Applied Biological Chemistry, Faculty of Agriculture, Iwate University, Morioka, Japan.
Katsuhiro SawasatoDepartment of Applied Biological Chemistry, Faculty of Agriculture, Iwate University, Morioka, Japan.ORCID https://orcid.org/0000-0001-9965-970X
Ken-Ichi NishiyamaDepartment of Applied Biological Chemistry, Faculty of Agriculture, Iwate University, Morioka, Japan.ORCID https://orcid.org/0000-0003-0478-4482
Iwate University · JP

Funding

Japan Society for the Promotion of Science 22H02567Japan Society for the Promotion of Science 22H05392Japan Society for the Promotion of Science 22K19262Japan Society for the Promotion of Science 23H04536
6 · The paper itself

Abstract

CdsA is a CDP-diacylglycerol synthase essential for phospholipid and glycolipid MPIase biosynthesis, and therefore for growth. The initiation codon of CdsA has been assigned as "TTG," while methionine at the 37th codon was reported to be an initiation codon in the original report. Since a vector containing the open reading frame starting with "TTG" under a controllable promoter complemented the cdsA knockout, "TTG" could function as an initiation codon. However, no evidence supporting that this "TTG" is the sole initiation codon has been reported. We determined the initiation codon by examining the ability of mutants around the N-terminal region to complement cdsA mutants. Even if the "TTG" was substituted with a stop codon, the clear complementation was observed. Moreover, the clones with multiple mutations of stop codons complemented the cdsA mutant up to the 37th codon, indicating that cdsA possesses multiple codons that can function as initiation codons. We constructed an experimental system in which the chromosomal expression of cdsA can be analyzed. By means of this system, we found that the cdsA mutant with substitution of "TTG" with a stop codon is fully functional. Thus, we concluded that CdsA contains multiple initiation codons.

Indexed as

Diacylglycerol CholinephosphotransferaseGlycolipidsPhospholipidsCodon, InitiatorCodon, TerminatorProtein BiosynthesisCodon, InitiatorCodon, TerminatorDiacylglycerol Cholinephosphotransferaseglycolipid MPIaseGlycolipidsPhospholipidsCDP‐diacylglycerol synthaseCdsAinitiation codonMPIasephospholipids

Identifiers

PMID38351722
PMCPMC11448367
OpenAlexW4391821117

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.