Evidence map›Paper›PMID 38351061›Full record

ArticleNature communications2024

Structural and mechanistic characterization of bifunctional heparan sulfate N-deacetylase-N-sulfotransferase 1.

Courtney J Mycroft-West, Sahar Abdelkarim, Helen M E Duyvesteyn, Neha S Gandhi, Mark A Skidmore, Raymond J Owens, Liang Wu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Synthetic biology for heparin biomanufacturing.Bioresources and bioprocessing · 2026
    Review
  5. Article
  6. Structural glycobiology - from enzymes to organelles.Biochemical Society transactions · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Courtney J Mycroft-WestThe Rosalind Franklin Institute, Harwell Science & Innovation Campus, OX11 0QX, Didcot, UK.
Sahar AbdelkarimThe Rosalind Franklin Institute, Harwell Science & Innovation Campus, OX11 0QX, Didcot, UK.
Helen M E DuyvesteynDivision of Structural Biology, Nuffield Department of Medicine, University of Oxford, The Wellcome Centre for Human Genetics, OX3 7BN, Oxford, UK.
Neha S GandhiDepartment of Computer Science and Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, Karnataka, India.ORCID 0000-0003-3119-6731
Mark A SkidmoreCentre for Glycoscience Research and Training, Keele University, ST5 5BG, Newcastle-Under-Lyme, UK.ORCID 0000-0002-0287-5594
Raymond J OwensThe Rosalind Franklin Institute, Harwell Science & Innovation Campus, OX11 0QX, Didcot, UK.ORCID 0000-0002-3705-2993
Liang WuThe Rosalind Franklin Institute, Harwell Science & Innovation Campus, OX11 0QX, Didcot, UK. liang.wu@rfi.ac.uk.ORCID 0000-0003-0294-7065
Centre for Human Genetics · GBRosalind Franklin Institute · GBKeele University · GBQueensland University of Technology · AU

Funding

Biotechnology and Biological Sciences Research Council BB/L023717/1Biotechnology and Biological Sciences Research Council BB/V018523/1Biotechnology and Biological Sciences Research Council BB/X011739/1Biotechnology and Biological Sciences Research Council EP/X019179/1Wellcome TrustWellcome Trust 060208/Z/00/ZWellcome Trust 093305/Z/10/ZWellcome Trust 203141/Z/16/ZWellcome Trust 218579/Z/19/Z
6 · The paper itself

Abstract

Heparan sulfate (HS) polysaccharides are major constituents of the extracellular matrix, which are involved in myriad structural and signaling processes. Mature HS polysaccharides contain complex, non-templated patterns of sulfation and epimerization, which mediate interactions with diverse protein partners. Complex HS modifications form around initial clusters of glucosamine-N-sulfate (GlcNS) on nascent polysaccharide chains, but the mechanistic basis underpinning incorporation of GlcNS itself into HS remains unclear. Here, we determine cryo-electron microscopy structures of human N-deacetylase-N-sulfotransferase (NDST)1, the bifunctional enzyme primarily responsible for initial GlcNS modification of HS. Our structures reveal the architecture of both NDST1 deacetylase and sulfotransferase catalytic domains, alongside a non-catalytic N-terminal domain. The two catalytic domains of NDST1 adopt a distinct back-to-back topology that limits direct cooperativity. Binding analyses, aided by activity-modulating nanobodies, suggest that anchoring of the substrate at the sulfotransferase domain initiates the NDST1 catalytic cycle, providing a plausible mechanism for cooperativity despite spatial domain separation. Our data shed light on key determinants of NDST1 activity, and describe tools to probe NDST1 function in vitro and in vivo.

Indexed as

Heparan SulfateSulfotransferasesCatalytic DomainCryoelectron MicroscopyExtracellular MatrixHumansHeparan SulfateSulfotransferases

Identifiers

PMID38351061
PMCPMC10864358
OpenAlexW4391786445

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.