Evidence map›Paper›PMID 38347078›Full record

ArticleCommunications biology2024

High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.

Kazutoshi Tani, Ryo Kanno, Ayaka Harada, Yuki Kobayashi, Akane Minamino, Shinji Takenaka, Natsuki Nakamura, Xuan-Cheng Ji, Endang R Purba, Malgorzata Hall and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Probing the Dual Role of CaBiomolecules · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Kazutoshi Tani *Center for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. ktani@ccs.tsukuba.ac.jp.ORCID 0000-0003-4835-154X
Ryo Kanno *Quantum Wave Microscopy Unit, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Ayaka Harada *Life Science Center for Survival Dynamics, Tsukuba Advanced Research Alliance (TARA), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan.
Yuki KobayashiFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Akane MinaminoDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.
Shinji TakenakaDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.
Natsuki NakamuraFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Xuan-Cheng JiFaculty of Science, Ibaraki University, Mito, 310-8512, Japan.
Endang R PurbaScientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Malgorzata HallScientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Long-Jiang YuPhotosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.ORCID 0000-0002-4962-1049
Michael T MadiganSchool of Biological Sciences, Program in Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Akira MizoguchiGraduate School of Medicine, Mie University, 1577 Kurimamachiyacho, Tsu, 514-8507, Japan.
Kenji IwasakiLife Science Center for Survival Dynamics, Tsukuba Advanced Research Alliance (TARA), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan.ORCID 0000-0002-3808-8904
Bruno M HumbelProvost Office, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495, Japan.
Yukihiro KimuraDepartment of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan. ykimura@people.kobe-u.ac.jp.ORCID 0000-0003-3747-0367
Zheng-Yu Wang-OtomoFaculty of Science, Ibaraki University, Mito, 310-8512, Japan. wang@ml.ibaraki.ac.jp.ORCID 0000-0003-1676-2002
Ibaraki University · JPOkinawa Institute of Science and Technology Graduate University · JPKobe University · JPUniversity of Tsukuba · JPChinese Academy of Sciences · CNMie University · JPSouthern Illinois University Carbondale · US

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 20H05086
6 · The paper itself

Abstract

The mesophilic purple sulfur phototrophic bacterium Allochromatium (Alc.) vinosum (bacterial family Chromatiaceae) has been a favored model for studies of bacterial photosynthesis and sulfur metabolism, and its core light-harvesting (LH1) complex has been a focus of numerous studies of photosynthetic light reactions. However, despite intense efforts, no high-resolution structure and thorough biochemical analysis of the Alc. vinosum LH1 complex have been reported. Here we present cryo-EM structures of the Alc. vinosum LH1 complex associated with reaction center (RC) at 2.24 Å resolution. The overall structure of the Alc. vinosum LH1 resembles that of its moderately thermophilic relative Alc. tepidum in that it contains multiple pigment-binding α- and β-polypeptides. Unexpectedly, however, six Ca ions were identified in the Alc. vinosum LH1 bound to certain α1/β1- or α1/β3-polypeptides through a different Ca

Indexed as

ChromatiaceaeLight-Harvesting Protein ComplexesPeptidesPhotosynthesisLight-Harvesting Protein ComplexesPeptides

Identifiers

PMID38347078
PMCPMC10861460
OpenAlexW4391741798

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.