Evidence map›Paper›PMID 38345650›Full record

ArticleCellular and molecular neurobiology2024

Disease-Associated Neurotoxic Astrocyte Markers in Alzheimer Disease Based on Integrative Single-Nucleus RNA Sequencing.

Wuhan Yu, Yin Li, Fuxin Zhong, Zhangjing Deng, Jiani Wu, Weihua Yu, Yang Lü

Open access · hybridAbstract read
In one paragraph

Article in Cellular and molecular neurobiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Article
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  7. Article
  8. Review
  9. Article
  10. Heterogeneity of Astrocyte Reactivity.Annual review of neuroscience · 2025
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wuhan Yu *Department of Geriatrics, The First Affiliated Hospital of Chongqing Medical University, No.1 Youyi Road, Yuzhong, Chongqing, 400016, China.ORCID http://orcid.org/0000-0003-1275-7089
Yin Li *Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032, China.ORCID http://orcid.org/0000-0002-4754-2814
Fuxin ZhongDepartment of Geriatrics, The First Affiliated Hospital of Chongqing Medical University, No.1 Youyi Road, Yuzhong, Chongqing, 400016, China.ORCID http://orcid.org/0000-0001-8370-6639
Zhangjing DengDepartment of Geriatrics, The First Affiliated Hospital of Chongqing Medical University, No.1 Youyi Road, Yuzhong, Chongqing, 400016, China.ORCID http://orcid.org/0009-0007-8161-8329
Jiani WuDepartment of Geriatrics, The First Affiliated Hospital of Chongqing Medical University, No.1 Youyi Road, Yuzhong, Chongqing, 400016, China.ORCID http://orcid.org/0000-0001-7488-4222
Weihua YuInstitutes of Neuroscience, Chongqing Medical University, Chongqing, 400016, China.ORCID http://orcid.org/0000-0003-4865-4428
Yang LüDepartment of Geriatrics, The First Affiliated Hospital of Chongqing Medical University, No.1 Youyi Road, Yuzhong, Chongqing, 400016, China. yanglyu@hospital.cqmu.edu.cn.ORCID http://orcid.org/0000-0002-9425-2967
The Affiliated Yongchuan Hospital of Chongqing Medical University · CNFudan University · CN

Funding

Chongqing Talent Plan cstc2022ycjh- bgzxm0184Key Project of Science and Technology Research Program of Chongqing Municipal Education Commission KJZD-K202200405
6 · The paper itself

Abstract

Alzheimer disease (AD) is an irreversible neurodegenerative disease, and astrocytes play a key role in its onset and progression. The aim of this study is to analyze the characteristics of neurotoxic astrocytes and identify novel molecular targets for slowing down the progression of AD. Single-nucleus RNA sequencing (snRNA-seq) data were analyzed from various AD cohorts comprising about 210,654 cells from 53 brain tissue. By integrating snRNA-seq data with bulk RNA-seq data, crucial astrocyte types and genes associated with the prognosis of patients with AD were identified. The expression of neurotoxic astrocyte markers was validated using 5 × FAD and wild-type (WT) mouse models, combined with experiments such as western blot, quantitative real-time PCR (qRT-PCR), and immunofluorescence. A group of neurotoxic astrocytes closely related to AD pathology was identified, which were involved in inflammatory responses and pathways related to neuron survival. Combining snRNA and bulk tissue data, ZEP36L, AEBP1, WWTR1, PHYHD1, DST and RASL12 were identified as toxic astrocyte markers closely related to disease severity, significantly elevated in brain tissues of 5 × FAD mice and primary astrocytes treated with Aβ. Among them, WWTR1 was significantly increased in astrocytes of 5 × FAD mice, driving astrocyte inflammatory responses, and has been identified as an important marker of neurotoxic astrocytes. snRNA-seq analysis reveals the biological functions of neurotoxic astrocytes. Six genes related to AD pathology were identified and validated, among which WWTR1 may be a novel marker of neurotoxic astrocytes.

Indexed as

Alzheimer DiseaseNeurodegenerative DiseasesAmyloid beta-PeptidesAnimalsAstrocytesCarboxypeptidasesHumansMiceRepressor ProteinsRNA, Small NuclearSequence Analysis, RNAAEBP1 protein, humanAmyloid beta-PeptidesCarboxypeptidasesRepressor ProteinsRNA, Small NuclearAlzheimer diseaseBiomarkersBulk RNA-seqNeurotoxic astrocytessnRNA-seq

Identifiers

PMID38345650
PMCPMC10861702
OpenAlexW4391752502

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.