Evidence map›Paper›PMID 38343277›Full record

ArticlePhysiological reports2024

Short-chain mono-carboxylates as negative modulators of allosteric transitions in Gloeobacter violaceus ligand-gated ion channel, and impact of a pre-β5 strand (Loop Ω) double mutation on crotonate, not butyrate effect.

Catherine Van Renterghem, Ákos Nemecz, Karima Medjebeur, Pierre-Jean Corringer

Open access · goldAbstract read
In one paragraph

Article in Physiological reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Catherine Van RenterghemChannel-Receptors Unit, Institut Pasteur, CNRS UMR3571, Université Paris Cité, Paris, France.ORCID 0000-0001-6211-7616
Ákos NemeczChannel-Receptors Unit, Institut Pasteur, CNRS UMR3571, Université Paris Cité, Paris, France.ORCID 0000-0002-1310-8964
Karima MedjebeurChannel-Receptors Unit, Institut Pasteur, CNRS UMR3571, Université Paris Cité, Paris, France.
Pierre-Jean CorringerChannel-Receptors Unit, Institut Pasteur, CNRS UMR3571, Université Paris Cité, Paris, France.ORCID 0000-0002-4770-430X
Centre National de la Recherche Scientifique · FR

Funding

Agence Nationale de la Recherche 13-BSV8-0020CNRS Institut des Sciences BiologiquesInstitut Pasteur
6 · The paper itself

Abstract

Using the bacterial proton-activated pentameric receptor-channel Gloeobacter violaceus ligand-gated ion channel (GLIC): (1) We characterize saturated, mono-carboxylates as negative modulators of GLIC (as previously shown for crotonate; Alqazzaz et al., Biochemistry, 2016, 55, 5947). Butyrate and crotonate have indistinguishable properties regarding negative modulation of wt GLIC. (2) We identify a locus in the pre-β5 strand (Loop Ω) whose mutation inverses the effect of the mono-carboxylate crotonate from negative to positive modulation of the allosteric transitions, suggesting an involvement of the pre-β5 strand in coupling the extracellular orthotopic receptor to pore gating. (3) As an extension to the previously proposed "in series" mechanism, we suggest that a orthotopic/orthosteric site-vestibular site-Loop Ω-β5-β6 "sandwich"-Pro-Loop/Cys-Loop series may be an essential component of orthotopic/orthosteric compound-elicited gating control in this pentameric ligand-gated ion channel, on top of which compounds targeting the vestibular site may provide modulation.

Indexed as

CrotonatesCyanobacteriaLigand-Gated Ion ChannelsButyratesMutationButyratesCrotonatesLigand-Gated Ion ChannelsGLICLoop Ωorthotopic sitepLGICpre-β5 strandvestibular site

Identifiers

PMID38343277
PMCPMC10859675
OpenAlexW4391751817

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.