Evidence map›Paper›PMID 38343238›Full record

ArticleJournal of imaging informatics in medicine2024

Hybrid Topological Data Analysis and Deep Learning for Basal Cell Carcinoma Diagnosis.

Akanksha Maurya, R Joe Stanley, Norsang Lama, Anand K Nambisan, Gehana Patel, Daniyal Saeed, Samantha Swinfard, Colin Smith, Sadhika Jagannathan, Jason R Hagerty and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of imaging informatics in medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Akanksha MauryaMissouri University of Science &Technology, Rolla, MO, 65209, USA.
R Joe StanleyMissouri University of Science &Technology, Rolla, MO, 65209, USA. stanleyj@mst.edu.ORCID 0000-0003-0477-3388
Norsang LamaMissouri University of Science &Technology, Rolla, MO, 65209, USA.
Anand K NambisanMissouri University of Science &Technology, Rolla, MO, 65209, USA.
Gehana PatelUniversity of Missouri, Columbia, MO, USA.
Daniyal SaeedUniversity of Missouri, Columbia, MO, USA.
Samantha SwinfardMissouri University of Science &Technology, Rolla, MO, 65209, USA.
Colin SmithA.T. Still, University of Health Sciences, Kirksville, MO, USA.
Sadhika JagannathanUniversity of Missouri, Kansas City Medical School, Kansas City, MO, USA.
Jason R HagertyS&A Technologies, Rolla, MO, USA.
William V StoeckerS&A Technologies, Rolla, MO, USA.
Missouri University of Science and Technology · USSS&C Technologies (United States) · USUniversity of Missouri · USA.T. Still University · USUniversity of Missouri–Kansas City · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A critical clinical indicator for basal cell carcinoma (BCC) is the presence of telangiectasia (narrow, arborizing blood vessels) within the skin lesions. Many skin cancer imaging processes today exploit deep learning (DL) models for diagnosis, segmentation of features, and feature analysis. To extend automated diagnosis, recent computational intelligence research has also explored the field of Topological Data Analysis (TDA), a branch of mathematics that uses topology to extract meaningful information from highly complex data. This study combines TDA and DL with ensemble learning to create a hybrid TDA-DL BCC diagnostic model. Persistence homology (a TDA technique) is implemented to extract topological features from automatically segmented telangiectasia as well as skin lesions, and DL features are generated by fine-tuning a pre-trained EfficientNet-B5 model. The final hybrid TDA-DL model achieves state-of-the-art accuracy of 97.4% and an AUC of 0.995 on a holdout test of 395 skin lesions for BCC diagnosis. This study demonstrates that telangiectasia features improve BCC diagnosis, and TDA techniques hold the potential to improve DL performance.

Indexed as

Basal cell carcinomaDeep learningDermoscopyFusionPersistent homologyTDATelangiectasiaTransfer learning

Identifiers

PMID38343238
PMCPMC10976904
OpenAlexW4390796824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.